Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02508 ATGAGTTCTCGGACAGGCAAGGGACCTGCTGTCAGAAGCTACCGGAGGAGAAAGGCAGTTTTGGACCTTGACCTTAATCTTGTGCCGGCTAGTGACAATCGTGAGCACGAGGGACCTTCAACACAGTCAGGGCCACTAGGAGTTGCAGTTGAACAGCAGCCACCGGCTTCTCAACCAACGATGATTGATGTGGAAGACATTGATGATGATGTTGTTGAATGTACCCCAGGGGCTTTTGCGGAGAGTGATAGTGCTAAAGTGCTTCCTGAACCTCGAATTGAGCCTGTTTTCAACTGTCCAATATGTATGGGTCCTTTGGCAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGCGCTCAGGGAAAATGCCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 465 0.4688 MSSRTGKGPAVRSYRRRKAVLDLDLNLVPASDNREHEGPSTQSGPLGVAVEQQPPASQPTMIDVEDIDDDVVECTPGAFAESDSAKVLPEPRIEPVFNCPICMGPLAEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02508 154 ProSiteProfiles Zinc finger RING-type profile. 99 137 IPR001841 -
Vimu5g02508 154 ProSitePatterns Zinc finger RING-type signature. 114 123 IPR017907 -
Vimu5g02508 154 MobiDBLite consensus disorder prediction 25 57 - -
Vimu5g02508 154 PANTHER ELFLESS, ISOFORM B 1 81 - -
Vimu5g02508 154 Pfam Zinc finger, C3HC4 type (RING finger) 98 136 - -
Vimu5g02508 154 SMART ring_2 99 136 IPR001841 -
Vimu5g02508 154 SUPERFAMILY RING/U-box 98 143 - -
Vimu5g02508 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Vimu5g02508 154 MobiDBLite consensus disorder prediction 35 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02508 Vimu-Chr5 35459920 35461833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02508 35 153 C3H Transcription Factor Family AT3G07200 41.718 3.11e-30 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02508 K22651 - gmx:100792853 206.453