Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02500 ATGGGGAATATAAGGGAGACTGGGGAATTTTTGCAAGAAAGAATGAAAGAGTACTTTGATCAAGAATGTCAGCGCATAGATTTGTCTAGAATTCAACCTTGGGGACAAGATTGTTCTAGCAACGGAGTGCAATCTCACTATCGCATTCTGCCTTCGCTATGCCATCACGTTGTTTTGCTTGGAGTCATTTTGTTGTCGCCTAGCATTGCCTTGCCATTGCGTTTGGACCCTCTTCTTGTTGCCTCGTCTTCCTTTAGTTCAACTTCTTCACGAGAGAAGTTTGTCTCTTTGAAGAAGAATACACCACAAGATATTGTAGCTGAATTAGAAGAGGATCTACAAAATTCCAAATCAACATTTGAAAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATGTTGAAGCGAAAAAGAAGTATGAGTTCTTGGAGTCGATTAGTGCAATAATGGATGCTCATTTGAGATACTTTAAGCTGGGTTATGACTTACTAAGCCAAATGGAGCCCTATATTCACCAGGTGTTAACATATGCACAACAATCTAAAGAACTTGCTAATGTTGAGCAAGATAAGCTTGCAAAACGGATTCAGGAATACAGAACACAGGCAGAGTTAGAGAATATACGAGCTTCTAGCAATTTTACTGAAACCATGTCAGGTTCTGAAGGCATCCATGTTGTAGGCTTGAATTCGTACAGGAGTTTAGATTCAGGGATGCTGTCTGCAACCAAAGGGGAGGCAATTAAACAAGGTTATCTGTTAAAACGGTCATCAGGCTCGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAAGGAGTTTATATTATTACAGAGTCAAGGGTGTCAAACCCACGGGCTCTCAGTCATATAATTATGTTCGTTCTTATGAACAAACTAGTGGAATGTTTGGTAGGTTCCGTTTAAAACACAACAGAGCTGCATCAATGAATGATGATATTTTAGGTTGTTACACTATTGATCTATGCACATCTACTATAAAGATGGATGCAGAAGATACAGATCTACGACTTTGCTTCCGAATAATTTCTCCCTCAAAAACGCTCACACTTCAGGCCGAAAATGAAGCTGATAGGATGGACTGGGTTAACAAAATTACTGGAGCTATAACATTACTTTTTAATTCACAGTTTCTTCAAGAGCCTCAATATGGTGGAGCGAATTCAGAGAGTAAAAACTTAGCAACTGGTGCTTCTTTGTCATGTCATTCGGACGATGGTCAGGAATCATTGAGTAATGACTTATATTCCACGGAAGTGGGTAGTGTCTCTAAGATTTTAAGGGGAATTCCAGGGAATGATAAATGTGCTGAGTGTAGTGCTCCTGAACCAGAATGGGCATCTCTAAACCTTGGCATATTGTTATGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGTGTTCATATCTCTAAGGTGAGATCTATAACATTAGATGTTAGGGTTTGGGAAAATACCATTTTGGAGTTATTTGATAACTTAGGTGAATTAGGTGTGCCTATTAAACCTTGTTCAACAGATGCCTTCCAAATCAAAGAGAAATACATCCAAGCAAAGATTTCTGAAAAGAATTCTGTTATTTATGAGTTCATTGAGTACGTAGAGAAATCACTAATAATCCGAGAAGAGGATATACCCAACAATCCTTCAGTTTCCGTAAGAATTTGGCAAGCAGTTCAGGCTGTAAATGTAAGAGAAGTGTATCGGCTTGTTGTTACATCAGAATCAAATATGATAAACACAAAATATGGTGATGAGGTTCCCCATGCTGCTGAGGAGGAAGGGCAGCAGCATGATCCCGAAGCCTGTCTGAAGGTTGAAGAGAGTATCGAGACTGAGAGGTGTTTCCGTGGATGGTCATTATTACATTTGGCATGTCAAACTGACAGTACACTGATGGTCGAGTTGTTGCTCCAATTTGGTGCTGATGTAAATATGTGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTACAAGTGGGAAAAATAATTTGGCAAAGTTTCTATTAAGAAGGGGTGCAAGGCCGTCAATTAAAGATGCTGGAGGGCTCACTATACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCTAG 2157 0.3973 MGNIRETGEFLQERMKEYFDQECQRIDLSRIQPWGQDCSSNGVQSHYRILPSLCHHVVLLGVILLSPSIALPLRLDPLLVASSSFSSTSSREKFVSLKKNTPQDIVAELEEDLQNSKSTFEKSRFNLVNSLMNVEAKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELENIRASSNFTETMSGSEGIHVVGLNSYRSLDSGMLSATKGEAIKQGYLLKRSSGSRGDWKRRFFVLDNQRSLYYYRVKGVKPTGSQSYNYVRSYEQTSGMFGRFRLKHNRAASMNDDILGCYTIDLCTSTIKMDAEDTDLRLCFRIISPSKTLTLQAENEADRMDWVNKITGAITLLFNSQFLQEPQYGGANSESKNLATGASLSCHSDDGQESLSNDLYSTEVGSVSKILRGIPGNDKCAECSAPEPEWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVRVWENTILELFDNLGELGVPIKPCSTDAFQIKEKYIQAKISEKNSVIYEFIEYVEKSLIIREEDIPNNPSVSVRIWQAVQAVNVREVYRLVVTSESNMINTKYGDEVPHAAEEEGQQHDPEACLKVEESIETERCFRGWSLLHLACQTDSTLMVELLLQFGADVNMCDYHGRTPLHHCITSGKNNLAKFLLRRGARPSIKDAGGLTILERAMEMGAITDEELFIMLAEC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02500 718 SUPERFAMILY PH domain-like 239 395 - -
Vimu5g02500 718 SMART PH_update 247 382 IPR001849 -
Vimu5g02500 718 Gene3D - 239 392 IPR011993 -
Vimu5g02500 718 SUPERFAMILY BAR/IMD domain-like 89 269 IPR027267 -
Vimu5g02500 718 Gene3D Arf GTPase activating protein 419 543 IPR038508 -
Vimu5g02500 718 ProSiteProfiles Ankyrin repeat profile. 659 691 IPR002110 GO:0005515
Vimu5g02500 718 ProSiteProfiles Ankyrin repeat region circular profile. 659 690 - -
Vimu5g02500 718 Pfam BAR domain of APPL family 89 183 IPR004148 GO:0005515|GO:0005737
Vimu5g02500 718 ProSiteProfiles Ankyrin repeat profile. 626 658 IPR002110 GO:0005515
Vimu5g02500 718 ProSiteProfiles ARF GTPase-activating proteins domain profile. 430 504 IPR001164 GO:0005096
Vimu5g02500 718 Pfam Putative GTPase activating protein for Arf 434 505 IPR001164 GO:0005096
Vimu5g02500 718 CDD PH_ACAP 249 384 - -
Vimu5g02500 718 SMART arf_gap_3 430 542 IPR001164 GO:0005096
Vimu5g02500 718 ProSiteProfiles Ankyrin repeat region circular profile. 626 657 - -
Vimu5g02500 718 SMART ANK_2a 626 655 IPR002110 GO:0005515
Vimu5g02500 718 SMART ANK_2a 659 688 IPR002110 GO:0005515
Vimu5g02500 718 Gene3D - 559 716 IPR036770 -
Vimu5g02500 718 Pfam Ankyrin repeats (3 copies) 622 690 IPR002110 GO:0005515
Vimu5g02500 718 Coils Coil 182 202 - -
Vimu5g02500 718 Pfam PH domain 248 379 IPR001849 -
Vimu5g02500 718 ProSiteProfiles PH domain profile. 246 380 IPR001849 -
Vimu5g02500 718 PANTHER CENTAURIN/ARF 86 716 IPR045258 GO:0005096
Vimu5g02500 718 SUPERFAMILY Ankyrin repeat 586 713 IPR036770 -
Vimu5g02500 718 CDD ArfGap 434 528 - -
Vimu5g02500 718 SUPERFAMILY ArfGap/RecO-like zinc finger 432 533 IPR037278 -
Vimu5g02500 718 Gene3D Arfaptin homology (AH) domain/BAR domain 83 206 IPR027267 -
Vimu5g02500 718 PRINTS HIV Rev interacting protein signature 461 478 IPR001164 GO:0005096
Vimu5g02500 718 PRINTS HIV Rev interacting protein signature 442 461 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02500 Vimu-Chr5 35388902 35400115 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02500 440 488 C2H2 Transcription Factor Family AT3G07940 67.347 4.90e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02500 K12489 - gmx:100796740 1038.1