Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02495 ATGATTTCACGTGAGAGTTCTGCCACCGTGTCCGTGAGTGTTGCGAGTGTGGAGGAGTTTCGAGAAACCAAGGGCAGCCCCAGCAAAGGCAAGCACTTTAACCACGGTAGGTGTCTCCAATTTGATGGATCCCTTGAGTTTCCAAATAGAGCTCTCTCTTCCATTATTGTTTCCACTGCTATGGTTATTGCTTCATACTTCAAACTTCAATCTCATTTCAAGCTTTTGGTGTTCAATGGCTCTCATAATGGGAAACCAAAACAGTTGAAATTGGAAGTCCTCCTTTGCAACTTCAACTGTGGTTGGTCGGTCCCTAACATGGAGAGATCCTATGTTTTTGTTTTTCTCTGGGTCTCCGTTCTTTGTCTCTTCCTGTCCGAACCCGCCAGAGCTGAAGACGATTCCCAGCCACTACTCGCTCTCAAATCCTCCATTGACGTTCTCCACAAGCTCCCATGGCGGCAAGGAGCCGACGTGTGCACCTGGACAGGGGTCAAAGACTGCTTCAACGGAAGAGTCAGAAAGCTCGTTCTGGAACACTCCAACCTAACCGGTTCTCTCGATGCCAAGATCTTGAACCGTTTGGACCAGCTCCGAGTCCTCAGCTTCAAAGGAAACTCACTCTCCGGCCAAGTCCCTGACCTCTCCGCCCTGATCAACCTCAAATCGATTTTCCTCAACGACAACAACTTCTCCGGCGAGTTCCCCTCGTCGGTCGCGCTGCTCCACCGCGTCAAAGTCATTGTCCTGTCGCAAAACCACATCTCCGGCGACATTCCAGCGTCGCTTCTGAATCTCCGGCGACTCTACATCCTCTACCTGGAAGACAACGCGTTCACGGGAAGCATCCCGGCTTTCAACCAAACCAGCCTCAGGTATTTGAATGTCTCCAACAACCGACTCTCCGGCGAGATTCCGGAGACCGCCGCACTGATCCGGTTCAATGCCTCGTCGTTTTCAGGCAACCCGCGGCTCTGCGGGGAGAACATCCTCCAACCGTGCAAAAACGGCAGCGCTCCGTCGGCGCCGCCGATAAGCCCCAGCTATCCGCTGATCCCGGGAGGCACCGCGGCGGCGTCGAAGCGGGCGTCATATAACCGCACCAAACTGATAAAGATAATTGGAGGGTGCGTTGGTGGCTTTATTTTCATACTGTTGTGCATGGTTGTGGTGTGGGCGATTTGTAGGAAACGGAAGACGAGGGTGGGTTCCGGAACGAGGAGCAAGGGCGGTGCTGACGTGGCAGAGGGGGAGGCTGGTGCGGCGGGGAGTGCAGGAGGCGGCGGCGGCGGCGGCGAGGGCGGGGACAGTGGTAAACAAGGGGGTTTTGCGTGGGAAGGTGAGGGTCTAGGGAAGCTGGTGTTCTGCGGAGGAGGTGATCGCGAGATGAGTTATAGTTTGGAAGATTTGCTGAAAGCGTCGGCGGAGACTTTGGGGAGGGGTATTATCGGAAGTACATATAAAGCAGTTATGGAATCAGGGTTCATTGTTACTGTTAAGAGGTTGAAGGATGCAAGATACCCTGGTTTGGAAGAATTCAGAGCTCACATTCATGTTCTTGGAAGGCTCACTCACCCTAACCTGGTCCCACTCAGGGCCTATTTTCAGGCTAAAGAAGAACGTCTTCTCGTTTATGATTACTTCCCCAATGGCAGCCTCTTCTCCCTTATTCACGGATCAAAAACATCCGGCGGGGGAAAGCCTCTTCACTGGACATCCTGCCTTAAGATTGCCGAAGATCTAGCAACAGGCCTGCTCTATATCCACCAGAACCCCGGCATGACACATGGAAACCTAAAATCTTCTAATGTGTTGCTTGGTTCTGATTTTGAGTCATGTCTTACTGATTATGGTCTCACTGTTTTCCTAAATCCTGACTCAATGGACGAGCCCAGTGCCACATCTTTATTCTACAGAGCACCTGAATGCCGCAACTTTCAAAGGTCACAAACTCAACCAGCTGATGTATACAGCTTTGGGGTCCTTGTTCTAGAGCTTTTAACTGGCAAAACACCCTTCCAAGACCTTGTTCAGACGTATGGTTCAGACATACCTAGGTGGGTCCGGTCAGTGCGCGAAGAAGAGACAGAGTCCGGTGATGATCCTGCCTCATCAGGCAATGAAGCATCAGAAGAGAAGCTTCAGGCTCTTCTGAACATTGCCATGGCATGTGTTTCACTGGTGCCAGAAAACAGGCCTACAATGAGAGAGGTTTTAAAGATGATAAGAGATGCAAGAGGGGAGGCGCATGTCTCATCTAACAGTAGTGATCACTCTCCTGGAAGATGGTCAGATACTGTTCAAAGCTTTCCAAGGGAAGAACACCAGAGCATATGA 2337 0.5131 MISRESSATVSVSVASVEEFRETKGSPSKGKHFNHGRCLQFDGSLEFPNRALSSIIVSTAMVIASYFKLQSHFKLLVFNGSHNGKPKQLKLEVLLCNFNCGWSVPNMERSYVFVFLWVSVLCLFLSEPARAEDDSQPLLALKSSIDVLHKLPWRQGADVCTWTGVKDCFNGRVRKLVLEHSNLTGSLDAKILNRLDQLRVLSFKGNSLSGQVPDLSALINLKSIFLNDNNFSGEFPSSVALLHRVKVIVLSQNHISGDIPASLLNLRRLYILYLEDNAFTGSIPAFNQTSLRYLNVSNNRLSGEIPETAALIRFNASSFSGNPRLCGENILQPCKNGSAPSAPPISPSYPLIPGGTAAASKRASYNRTKLIKIIGGCVGGFIFILLCMVVVWAICRKRKTRVGSGTRSKGGADVAEGEAGAAGSAGGGGGGGEGGDSGKQGGFAWEGEGLGKLVFCGGGDREMSYSLEDLLKASAETLGRGIIGSTYKAVMESGFIVTVKRLKDARYPGLEEFRAHIHVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDLATGLLYIHQNPGMTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPDSMDEPSATSLFYRAPECRNFQRSQTQPADVYSFGVLVLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPASSGNEASEEKLQALLNIAMACVSLVPENRPTMREVLKMIRDARGEAHVSSNSSDHSPGRWSDTVQSFPREEHQSI 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02495 778 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 117 747 IPR046959 -
Vimu5g02495 778 SUPERFAMILY L domain-like 141 329 - -
Vimu5g02495 778 SUPERFAMILY Protein kinase-like (PK-like) 476 752 IPR011009 -
Vimu5g02495 778 Gene3D Ribonuclease Inhibitor 131 287 IPR032675 -
Vimu5g02495 778 FunFam Leucine-rich repeat receptor-like protein kinase 244 336 - -
Vimu5g02495 778 ProSiteProfiles Protein kinase domain profile. 472 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02495 778 MobiDBLite consensus disorder prediction 691 710 - -
Vimu5g02495 778 Gene3D Phosphorylase Kinase; domain 1 459 547 - -
Vimu5g02495 778 Gene3D Transferase(Phosphotransferase) domain 1 548 764 - -
Vimu5g02495 778 Pfam Protein kinase domain 475 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02495 778 Pfam Leucine rich repeat N-terminal domain 132 165 IPR013210 -
Vimu5g02495 778 ProSiteProfiles Leucine-rich repeat profile. 290 312 IPR001611 GO:0005515
Vimu5g02495 778 Gene3D Ribonuclease Inhibitor 288 338 IPR032675 -
Vimu5g02495 778 MobiDBLite consensus disorder prediction 749 778 - -
Vimu5g02495 778 MobiDBLite consensus disorder prediction 752 778 - -
Vimu5g02495 778 MobiDBLite consensus disorder prediction 402 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02495 Vimu-Chr5 35360284 35364729 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02495 116 778 Receptor kinase-like Gene Family AT1G60630 61.045 0.0 767
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu5g02495 Pkinase 2.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02495 - - gmx:100809866 1102.04