Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02489 ATGGCTTCCCTCTATGATGTGCTTGGAATTTCAATTGGCGCTAGCTGCGTGGAAATAAAGGCTGCTTACAGAAAGCTGGCTAGAACTTACCATCCCGATGTTGTGGCCATGAATCAGAAGGAAAGCTCAGCTCACCAATTCATGATGATCCAATCAGCTTACTCAACTTTGTCTGACCCAGAAAAGAGAGCTCAATATGACAGAGATAACAGATACAGAAGATCATCAGCTATGGCTTCCATGGCAGGAAGAAATCACACATTTTCCTGCGCTGGAGGAAGTGGGAGGAAATGGGAAACCGACCAGTGTTGGTAG 315 0.4571 MASLYDVLGISIGASCVEIKAAYRKLARTYHPDVVAMNQKESSAHQFMMIQSAYSTLSDPEKRAQYDRDNRYRRSSAMASMAGRNHTFSCAGGSGRKWETDQCW 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02489 104 Pfam DnaJ domain 4 67 IPR001623 -
Vimu5g02489 104 Gene3D DnaJ domain 2 101 IPR036869 -
Vimu5g02489 104 CDD DnaJ 5 59 IPR001623 -
Vimu5g02489 104 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Vimu5g02489 104 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Vimu5g02489 104 SMART dnaj_3 2 62 IPR001623 -
Vimu5g02489 104 SUPERFAMILY Chaperone J-domain 2 73 IPR036869 -
Vimu5g02489 104 PRINTS DnaJ domain signature 62 81 IPR001623 -
Vimu5g02489 104 PRINTS DnaJ domain signature 23 38 IPR001623 -
Vimu5g02489 104 PRINTS DnaJ domain signature 5 23 IPR001623 -
Vimu5g02489 104 PRINTS DnaJ domain signature 42 62 IPR001623 -
Vimu5g02489 104 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02489 Vimu-Chr5 35305382 35307143 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02489 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 8.12e-11 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02489 - - gmx:100798520 169.859