Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02483 ATGGGCACCGCAACCGCCTTTTCGCCTCCCGCCGTTTCAACCACCACGAAATGGCTGGGCTTCGTGGCCGCCGTCTGGATTCAGTGCATCTCCGGCAACAACTACACCTTCTCCAATTACTCCGATGCGCTCAAATCCCTCATGCATCTCACGCAGGTGCAACTCAACAACCTCTCCGTCGCTAAAGACATCGGAAAAGCCTTTGGCCTTCTGGCGGGCCTCGCTTCCGACCGCTTCCCGACTTGGGCCATTCTCCTGATAGGCTCCGTCGAAGGCCTAATAGGATACGGAGTCCAATGGCTCGTTGTGAGCCAGAAAATCCAGCCCCTTCCCTATTGGCAGTTCGTCGTGTTTGGTAAAACGACGCAGATGTGTGTGTTTCTGTGCATGGGAGGGAATAGCACGACGTGGATGAACACTGCCGTTTTGGTAACGTGCATACGCAACTTCCGTACAAACAGAGGACCCGTTTCGGGGATTTTGAAAGGCTTTGTAGGGTTGAGCACTGCGATATTCACCACGCTCTGTTCTGCGCTTTTCGCCGACGACCCTGCCTACTTCCTCGTCATGCTCTCTCTCGTTCCCCTCGTTGTTTGTCTCACCGGTATCTTTTTCCTCCGAGAGCTTCCTCCTGCCGTCGCCGCTGCCGGAAACGCCGAGGAGGTCAAGTATTTCGGCGTCTTCAACGTCGTTGCCGTCCTCGTCGCGCTCTTCCTCTTGGTCTATGGCTTCGTCCCCAGCCCTGGCGTCCTGGTGTCGCGAGTGTTCGTCGCCGTTCTGCTGGTTATGCTGGCTTCGCCGTTGGGGATTCCGGTGTACACGTACTTCAAGGGACGGCTCGGTGCGGGGAATGACGTGGAGGGGCAGAGAGCGAATGAACCGTTGCTTGGTGGTGGGGAAAAGGAAAAGGAAAGCGTGGCGGCGGTTGAAGAGGAGGCTTTGGTGGAGAAGAGACCGCCGATGGTGGGCGAAGAACACACGATAATGGAGGTGCTGAAGAGCGTGGATTTTTGGATCTTGTTCGTGTCGTTTCTCTGTGGGGTTGGAACCGGTTTGGCTGTGATGAACAATATGGGTCAAATCGGGTTGGCTCTCGGGTACCCAGATGTCTCACTTTTTGTCTCTTTGACCAGTATTTTCGGATTCTTTGGACGGATCATATCGGGTACCGTTTCCGAGTTCACAATCAAGAGAGCAGCGACACCAAGACCTCTGTGGAATGCAGCATCTCAGCTTCTAATGGCTGTTGGTTATATACTGATGGCAATGGCTATGCCAGGTTCTCTATACATTGGGTCTATTTTGGTTGGTATATGTTATGGAGTTAGGCTTGCAATCACAGTTCCGACAGCCTCGGAGTTATTTGGTCTGAAATACTATGGTCTGATCTACAACATTCTGATCCTTAACCTTCCTCTGGGCTCTTTCCTTTTCTCTGGTTTGCTTGCTGGCATACTGTATGATAGGGAAGCAACGACAACTGAGGGAGGAGGCAACACCTGTGTTGGAGGTCACTGTTACAGGCTAGTCTTTATTGTCATGACAGGAGCATGTATTGTTGGCTTCTTCTTAGACATTCTCTTGTCGTTCAGAACCAAAACTGTTTACACAAAGATTTCCATCAGCAAGAAACCCAAGAAATCCTTATCAGCATCAAGCAGCCGTTGA 1668 0.5192 MGTATAFSPPAVSTTTKWLGFVAAVWIQCISGNNYTFSNYSDALKSLMHLTQVQLNNLSVAKDIGKAFGLLAGLASDRFPTWAILLIGSVEGLIGYGVQWLVVSQKIQPLPYWQFVVFGKTTQMCVFLCMGGNSTTWMNTAVLVTCIRNFRTNRGPVSGILKGFVGLSTAIFTTLCSALFADDPAYFLVMLSLVPLVVCLTGIFFLRELPPAVAAAGNAEEVKYFGVFNVVAVLVALFLLVYGFVPSPGVLVSRVFVAVLLVMLASPLGIPVYTYFKGRLGAGNDVEGQRANEPLLGGGEKEKESVAAVEEEALVEKRPPMVGEEHTIMEVLKSVDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYPDVSLFVSLTSIFGFFGRIISGTVSEFTIKRAATPRPLWNAASQLLMAVGYILMAMAMPGSLYIGSILVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDREATTTEGGGNTCVGGHCYRLVFIVMTGACIVGFFLDILLSFRTKTVYTKISISKKPKKSLSASSSR 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02483 555 SUPERFAMILY MFS general substrate transporter 32 533 IPR036259 -
Vimu5g02483 555 CDD MFS_Mch1p_like 17 521 - -
Vimu5g02483 555 Gene3D MFS general substrate transporter like domains 13 216 IPR036259 -
Vimu5g02483 555 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 18 537 - -
Vimu5g02483 555 Gene3D MFS general substrate transporter like domains 303 552 IPR036259 -
Vimu5g02483 555 Pfam Nodulin-like 17 272 IPR010658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02483 Vimu-Chr5 35258497 35261343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02483 17 548 Nodulin-like Gene Family AT4G34950 67.684 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02483 - - gmx:100800237 852.818