Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02481 ATGCCTAAAGCTATCGCCTTTCTCGTTCACCCACGACTTCTCCTTCTCTTCCTTGTTCTCTCAATTTTCCTCATTTTCGCATATACTGGTTCTACCGCTACTTATGGTTCTACTACTCCAAAACTGGTGCGCAATTTAACTCTTTATCCCTATGCTGTTGTTATTTGGATCTGTTTTTGGCAATTGGGCAGGGTTTCAGGCATAATGATGGTTGTTGAGGAGAAAATAGAACAGGTTCCTGAAATTACACACAGAGTGTTCTTGGACATTGATATTGACAAACAGCGTTTAGGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGGTATGTCAATTGCAATTTCTAATGACCGAGTTTTCTTTCTGCAGAAAATTTTAGAGCTTTGTGTACAGGGTGGAGACATTGTTCGTCATGATGGTAAAGGGTCTGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCGGGCGTTGTCTCTATGGCAAATTCAGGACCTGATTCCAATGGTTCACAGTTTTTCATTACAACGGTGAAGGCCAGTTGGTTGGATGGAGAGCATGTTGTATTTGGCAAGGTTGTACAAGGCATGGATATTGTGTATGCAATTGAAGGGGGAGCTGGAACCTACAGTGGAAAACCCAGAAAGATGGTAGTGATAGCAGACTCTGGGGAGATACCCAAGAGCCACTGGGATGATGAAAGTTGA 744 0.4194 MPKAIAFLVHPRLLLLFLVLSIFLIFAYTGSTATYGSTTPKLVRNLTLYPYAVVIWICFWQLGRVSGIMMVVEEKIEQVPEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVGMSIAISNDRVFFLQKILELCVQGGDIVRHDGKGSESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDIVYAIEGGAGTYSGKPRKMVVIADSGEIPKSHWDDES 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02481 247 Gene3D - 63 244 IPR029000 -
Vimu5g02481 247 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 85 238 - -
Vimu5g02481 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Vimu5g02481 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 184 196 IPR002130 GO:0000413|GO:0003755
Vimu5g02481 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 138 IPR002130 GO:0000413|GO:0003755
Vimu5g02481 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 169 184 IPR002130 GO:0000413|GO:0003755
Vimu5g02481 247 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 197 212 IPR002130 GO:0000413|GO:0003755
Vimu5g02481 247 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 87 237 IPR002130 GO:0000413|GO:0003755
Vimu5g02481 247 FunFam Peptidyl-prolyl cis-trans isomerase CYP19-2 78 238 - -
Vimu5g02481 247 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 90 234 IPR002130 GO:0000413|GO:0003755
Vimu5g02481 247 SUPERFAMILY Cyclophilin-like 79 238 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02481 Vimu-Chr5 35244922 35248388 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02481 98 235 U-box Gene Family AT5G67530 39.161 1.60e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02481 - - gmx:100800775 320.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02481 5 35244922 35248388 Vimu5g02481 5 35244922 35248388 ECH