Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02475 ATGGGAAGATCCCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGACTCATATCTTACATTCGAGCTCACGGCGAGGGCTGCTGGCGGTCACTCCCCAAAGCCGCCGGCCTCCTCCGCTGCGGCAAGAGCTGCCGTCTACGCTGGATCAACTACCTCCGTCCCGACCTCAAGCGTGGCAACTTCACCGAAGAAGAGGATGAACTCATCATCAAACTCCACAGCCTTCTCGGGAACAAGTGGTCTTTGATAGCTGGAAGATTGCCGGGGAGAACGGACAATGAAATAAAGAACTATTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCACAGACCTCTCAACGAAGCAGCTTCTTCTGCAACAGTTGTAACAGTTGCAACTGCCAGTAATATATCTTTCGGTAAACAAGAACAAGAGACAAGTTCGAGTAACGGAAGCGTGGTTAAAGGGTCCATCTTAGAACGCTGCCCTGACTTGAACCTTGAGTTAACCATTAGTCCTCCTCGCCACCAACAACATCATCAACAACAACCTCAGAAGAATCTTTGCTTCGTTTGCAGTTTGGGTTTGCACAACAGCAAGGATTGCAGCTGCAACGTGGCCAACGCCGTCGCTGCCAACAACACCGCTCCTCCTGCTTCTGCCGCCGCTTATGATTTCTTGGGCTTGAAAACCAACGGTGTTTGGGATTGCACCAGCTTGGAAATGAAATGA 762 0.4974 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAASSATVVTVATASNISFGKQEQETSSSNGSVVKGSILERCPDLNLELTISPPRHQQHHQQQPQKNLCFVCSLGLHNSKDCSCNVANAVAANNTAPPASAAAYDFLGLKTNGVWDCTSLEMK 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02475 253 CDD SANT 69 112 IPR001005 -
Vimu5g02475 253 CDD SANT 16 61 IPR001005 -
Vimu5g02475 253 Gene3D - 68 137 - -
Vimu5g02475 253 SMART sant 66 114 IPR001005 -
Vimu5g02475 253 SMART sant 13 63 IPR001005 -
Vimu5g02475 253 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 186 - -
Vimu5g02475 253 FunFam Myb transcription factor 68 137 - -
Vimu5g02475 253 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Vimu5g02475 253 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu5g02475 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu5g02475 253 Gene3D - 14 66 - -
Vimu5g02475 253 FunFam MYB-related transcription factor 13 66 - -
Vimu5g02475 253 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu5g02475 253 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vimu5g02475 253 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu5g02475 253 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02475 Vimu-Chr5 35192236 35193121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02475 1 253 MYB Transcription Factor Family AT4G38620 59.859 3.18e-107 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu5g02475 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02475 K09422 - gmx:778030 437.958