Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02473 ATGGCGTTGCCGGTGGTCGTCGACTCAGAGTACCTCAAGGAGGTCGACAAAGCTCGCCGCGATCTCCGTGCACTAATCGCTAACAGGAACTGCGCTCCTCTCATGCTTCGCCTAGCCTGGCACGATGCCGGCACTTACGATGCCAAAACCAAGACCGGTGGACCTAACGGTTCTATCCGGAACGAGGAAGAGTATTCTCACGGCTCCAACAATGGCTTGAAAAAGGCTATTGACTTCTGCGAGGAAGTGAAGGCAAAACATCCTAAGATTACGTACGCAGATCTTTACCAGCTTGCTGGTGTTGTTGCAGTTGAGGTTACGGGTGGTCCCACAATTGATTTTGTCCCTGGTAGAAAGGATTCAAAAGTATCCCCTAAAGAAGGGCGGCTTCCTGATGCTAAACAAGGTGTTTCTCATCTCCGTGATATCTTCTATCGAATGGGCTTGACTGATCGAGATATCGTTGCACTGTCTGGAGGGCATACGCTGGGGAGAGCACATCCAGAGAGATCAGGGTTTGATGGACCTTGGACGGAGGACCCTCTGAAGTTTGATAACTCGTACTTTTTGGAACTTTTGAAAGGCGAGTATATTGGGCTGCTCAAACTTCCAACAGACAAGGCTTTGTTGGAGGGTCCTGAATTTCGCCGTTACGTTGAACTATATGCGAAGGACGAGGATGCTTTTTTCCGGGATTATGCTGAAGCGCATAAGAAACTTTCAGAGCTAGGCTTTGTGCCAAGTTCAAAGGCGATTTCTATTAAGGATGGGACCGTACTGGCACAAGGTGCTGTAGGAGTTGTAGTTACTGCGGCGGTGGTGATCCTCAGTTACTTGTATGAAGTTCGCAAAAGGGGGAAGTAG 864 0.4919 MALPVVVDSEYLKEVDKARRDLRALIANRNCAPLMLRLAWHDAGTYDAKTKTGGPNGSIRNEEEYSHGSNNGLKKAIDFCEEVKAKHPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSKVSPKEGRLPDAKQGVSHLRDIFYRMGLTDRDIVALSGGHTLGRAHPERSGFDGPWTEDPLKFDNSYFLELLKGEYIGLLKLPTDKALLEGPEFRRYVELYAKDEDAFFRDYAEAHKKLSELGFVPSSKAISIKDGTVLAQGAVGVVVTAAVVILSYLYEVRKRGK 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02473 287 ProSitePatterns Peroxidases active site signature. 32 43 IPR019794 GO:0004601
Vimu5g02473 287 SUPERFAMILY Heme-dependent peroxidases 12 245 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Haem peroxidase superfamily signature 108 120 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Haem peroxidase superfamily signature 32 46 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Haem peroxidase superfamily signature 90 107 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Haem peroxidase superfamily signature 153 168 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Haem peroxidase superfamily signature 177 192 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 ProSitePatterns Peroxidases proximal heme-ligand signature. 153 163 IPR019793 -
Vimu5g02473 287 Gene3D Peroxidase, domain 2 131 237 - -
Vimu5g02473 287 Pfam Peroxidase 19 225 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 ProSiteProfiles Plant heme peroxidase family profile. 32 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 FunFam L-ascorbate peroxidase, cytosolic 131 237 - -
Vimu5g02473 287 Gene3D - 18 244 - -
Vimu5g02473 287 CDD ascorbate_peroxidase 4 245 - -
Vimu5g02473 287 FunFam Cytosolic ascorbate peroxidase 18 137 - -
Vimu5g02473 287 PANTHER THYLAKOID LUMENAL 29 KDA PROTEIN, CHLOROPLASTIC-RELATED 8 249 IPR044831 GO:0004601|GO:0034599
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 32 47 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 108 120 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 147 168 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 50 60 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 221 245 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 64 88 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 89 107 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 129 146 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 169 193 IPR002207 GO:0004601|GO:0006979|GO:0020037
Vimu5g02473 287 PRINTS Plant ascorbate peroxidase signature 11 31 IPR002207 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02473 Vimu-Chr5 35184309 35188936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02473 32 240 Peroxidase AT4G16270 31.061 1.12e-21 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02473 K00434 - gmx:100170727 521.931