Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02467 ATGGTATATCCTGGTGTGCCGAGTATTGGGCATGATGTTCGAGTCCCAACCATGAAAGATGAGATGGTTCGCTCAACAAGGAAGGCCAGGTGTTTGATAATTGATGGCCATAGTAGACAGCTTCTCGACTGGGCTCTCGTCAAGGTTGCTGAACCAGGGGATTCTGTTGTAGCAGTTCATGTTGTTAAAAATCCAGATCACGTTTGGAAAAGCAATACTCTGATAGATGACTATTTAGAAGTTTATGAAGGGCTATGTGATGTTAAGAAGTTAGATCTCACTGGTCAAATCTTCTGTGGATGCTCCGTCCGAAACATTCTTGTTAGAGAAGCAAAAAAGCATGATGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGGCTTAGCTAAATATTGCGCCAAACGAGTACCAGCCACCACCAATGTTCTAGCCATCCAAGGCTCAAGGATTGTATATAGGAGTTGCACCAACGAACAACAACCAGGTTTGTCTGGTGGAGACCATGGTACTCTTATAAAGGACCCAAGGCCAAGCTTAACAACCATAGGAAAAAACTCAAGTAACAGAGTAAACCAGTCTACATTTAGTGACACCACCCTGGAGATTGAGAAACCAGCAACCAAAAATTCCTTAGATTTGAAGGAAGAAGTATTTAAAGGATTAGCAAAATGTCAGACAAGGTCAATATCCATGTTTGCAGGTGATTCAGCTAAGCAGAAGCTTGGGTGGCCTCTACTCCGAGGAGCCAAATCGGGAACCTCACAAACCCATCATGCAAGGGACATGTCAGTAGTACAATGGGTAATGACTTTACCGGATCGTTCACCATCCAAAAGTCCCTGCTCTTCTTCCTCTGAGGATAATCCATTTGAAAGGAGCATCAGCGATATTGATGATGAGAGCTCCAAATTTTCTTCAGCTCCATCTGTTGAGCTACCAAATGGCCTAGAGGAGATGCAATGCGTAAATTCAATCGACTGCGATTGGTTCAGCCTTGAACTTCTGCAGTCTTGCACTAGACAATTTTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATTGTGTGTACAAGGGAGTCCTCCCTGATGGAAAGCCAGTGGCAGTTAAAGTATTGCAGACATCAAAAGAAGCCTGGAAAGAGTTTTCCCTTGAGATGGAAATAACATCCTCATTGAGGCACAAAAACATTGCCCCTCTACTTGGGATTTGTACAGAGAACAATACTTTAATCTCCGTTTATGATTATTTGCCCCAGGGCACCTTAGAGGAAAATCTGCATGGAAAGAGCAAATTGTCATGGGAGGTGAGATTTAATGTGGCAGTTGGGATCGCTCAAGCCCTAGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCTAACATTCTTCTTTCCCTGGGGTTTGAACCTCAGTTATCTGATTTCGGACTTGCAGTATGGGGACCAACAAATTCATCCTTTTTGACGCAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAATGTCAGTGACAAGATAGATGTTTATGCATTTGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCAGAAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATGATAGATAGTGGGGATATTAAAGGCTTGTTGGACCCAGATTTAGAAGGGAAATTTGATGAGGTCCAATTGCAAAGAATGGTTACGGCAGCATCTTTATGCATCCAACGGGCTGCTCGACTTCGTCCTAAACTGAACCAGATACTGAAGATCCTAAAAGGAGATGAAAAAGTTGAATATTTGCTGAACTCCCTTGGGAACAACGAGGATGATTCAGAAAATGGAGAAAACATCGATGATGAAGTGTATCCAAGTTCAAGTGCTGAGTTACACCTGAGTCTTGCTTTACTTGGTGTGGACGATGACAAAGCATCACAAACTAGCACTGAGCTCAGCTATAGTGAGCACTTGAAAGAATGGAGCAGGTCATCAAGTTTCAATTAG 2049 0.4319 MVYPGVPSIGHDVRVPTMKDEMVRSTRKARCLIIDGHSRQLLDWALVKVAEPGDSVVAVHVVKNPDHVWKSNTLIDDYLEVYEGLCDVKKLDLTGQIFCGCSVRNILVREAKKHDALALVVGGRAGLAKYCAKRVPATTNVLAIQGSRIVYRSCTNEQQPGLSGGDHGTLIKDPRPSLTTIGKNSSNRVNQSTFSDTTLEIEKPATKNSLDLKEEVFKGLAKCQTRSISMFAGDSAKQKLGWPLLRGAKSGTSQTHHARDMSVVQWVMTLPDRSPSKSPCSSSSEDNPFERSISDIDDESSKFSSAPSVELPNGLEEMQCVNSIDCDWFSLELLQSCTRQFSSENLVGKGGSNCVYKGVLPDGKPVAVKVLQTSKEAWKEFSLEMEITSSLRHKNIAPLLGICTENNTLISVYDYLPQGTLEENLHGKSKLSWEVRFNVAVGIAQALDYLHREALKPVIHRDVKSSNILLSLGFEPQLSDFGLAVWGPTNSSFLTQDVVGTFGYLAPEYFMYGNVSDKIDVYAFGVVLLELISGREPISSEACKGQESLVVWAKPMIDSGDIKGLLDPDLEGKFDEVQLQRMVTAASLCIQRAARLRPKLNQILKILKGDEKVEYLLNSLGNNEDDSENGENIDDEVYPSSSAELHLSLALLGVDDDKASQTSTELSYSEHLKEWSRSSSFN 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02467 682 SUPERFAMILY Protein kinase-like (PK-like) 323 607 IPR011009 -
Vimu5g02467 682 PANTHER OS08G0249100 PROTEIN 211 618 IPR046958 -
Vimu5g02467 682 CDD USP_Like 34 129 - -
Vimu5g02467 682 ProSiteProfiles Protein kinase domain profile. 341 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02467 682 SMART serkin_6 341 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02467 682 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 310 415 - -
Vimu5g02467 682 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Vimu5g02467 682 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 37 124 - -
Vimu5g02467 682 MobiDBLite consensus disorder prediction 271 308 - -
Vimu5g02467 682 FunFam Putative receptor-like serine/threonine-protein kinase 416 622 - -
Vimu5g02467 682 Pfam Protein kinase domain 343 547 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02467 682 Gene3D Transferase(Phosphotransferase) domain 1 416 625 - -
Vimu5g02467 682 MobiDBLite consensus disorder prediction 271 289 - -
Vimu5g02467 682 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02467 Vimu-Chr5 35130065 35133532 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02467 329 607 Trihelix Transcription Factor Family AT1G70460 43.357 4.70e-74 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu5g02467 Pkinase 1.4e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02467 - - gmx:100789189 949.503