Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02464 ATGGACGACGGCGAGCTCGATTTCTCGACGCAGGAAGTGTTTTCGAGTCCGAACATTGGGGAGCTTCCGAGCAGTGGTTCCATGGACAGTTTCTTCGACGAGCTTCTCAAGGACACGCATGCCTGCACGCACACCCACACATGCAACCCTCCGGGGCCCGATTTTTCGCACACTCATACGTGCTACCACGTGCACACCAAAATCGTGCCGGCACCTGATGAGGACCAGGTGGCCACCGACGACACGGCGGAGTCCGCGGAGAAGAAGTCGAAGAAGCGGCCCCTTGGGAACAAAGAAGCGGTTCGAAAGTATCGTGAGAAGAAGAAGGCTCGCGCGGCCTCGCTGGAGGACGAGGTGGTGAAATTGAGGGCTCTCAATCAGCATTTGATGAAGAAGTTGCAGAACCAGGCTGCTTTGGAAGCTGAAATCGCGAGGCTGAAGTGCTTGCTGGTGGACATTAGGGGCAGGATTGAAGGGGAAATTGGTTCCTTTCCGTATCAGAAATCGCCGAATGCGAACCCTCCGGTGGTTAACCTGCCTGGTTCTTATGTGATGAACCCTTGCAACATGCAGTGTGATGATAGGGTGTATTGCCTTCATCCGGGAGCGGATGGGAGAATCATGGAGAATGTATCATCGTTAAATGGGGAAGAGTTTGGTGGTTGTGAATTTGAGAACCTGCAGTGTCTAGCAAACCAGAATTTGGGGCTCAAGGAGCTGCGTGCATGTGGAGTTGGGCAGGCAGGGTCTAATGTAAATTCTTCTGCGTCAAAAAGAAAAGGGGGATCTCGTGCAGCAACAGCTGGTTGA 810 0.5321 MDDGELDFSTQEVFSSPNIGELPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPDEDQVATDDTAESAEKKSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQNQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKSPNANPPVVNLPGSYVMNPCNMQCDDRVYCLHPGADGRIMENVSSLNGEEFGGCEFENLQCLANQNLGLKELRACGVGQAGSNVNSSASKRKGGSRAATAG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02464 269 MobiDBLite consensus disorder prediction 9 23 - -
Vimu5g02464 269 SUPERFAMILY Leucine zipper domain 89 136 IPR046347 GO:0003700|GO:0006355
Vimu5g02464 269 MobiDBLite consensus disorder prediction 81 99 - -
Vimu5g02464 269 Gene3D - 76 153 - -
Vimu5g02464 269 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Vimu5g02464 269 Coils Coil 98 142 - -
Vimu5g02464 269 MobiDBLite consensus disorder prediction 248 269 - -
Vimu5g02464 269 PANTHER CCAAT/ENHANCER BINDING PROTEIN 2 165 IPR031106 GO:0003700|GO:0006351
Vimu5g02464 269 MobiDBLite consensus disorder prediction 72 99 - -
Vimu5g02464 269 MobiDBLite consensus disorder prediction 1 23 - -
Vimu5g02464 269 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Vimu5g02464 269 CDD bZIP 91 144 - -
Vimu5g02464 269 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02464 Vimu-Chr5 35121084 35129010 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02464 1 268 bZIP Transcription Factor Family AT2G16770 62.963 9.54e-113 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g02464 bZIP_2 7e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02464 K25785 - gmx:780549 449.514