Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02450 ATGTACCACAGACAACACCACACGATATCTCATCTCTATGCTTTCCTTCTTTTAGCATCTATATATACACTATGCTATACCTTCAAAAACAACACAACCCTTCTGAATCCTCAAGTATCAAAATTCAGATTCATTCTCTTAAATTTGAGATTGTTCTTCTTCCTTAAACGAGCTCAAAAAATGGGTTTCCGTTTACCTACCATCCGACGGGCATCATCATTCACAGCTAGACAAGCATCTTCAAAATCTGAAAACATACCAAAAGGCTATTTTGCCGTGTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTGAGTCAAGCCGAGGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTTACAATTCCATGCAGTGAAGATGTCTTCCAACATACAATTTCTTCCTTCAAGGGACAATAA 462 0.3874 MYHRQHHTISHLYAFLLLASIYTLCYTFKNNTTLLNPQVSKFRFILLNLRLFFFLKRAQKMGFRLPTIRRASSFTARQASSKSENIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQHTISSFKGQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02450 153 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 78 149 IPR003676 GO:0009733
Vimu5g02450 153 Pfam Auxin responsive protein 69 148 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02450 Vimu-Chr5 35051371 35056150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02450 75 151 Calmodulin-binding Proteins AT3G43120 42.857 4.41e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02450 - K14488 gmx:100816803 152.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02450 5 35051371 35056150 Vimu5g02450 5 35051371 35056150 ECH