Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02449 ATGTGTCAACATCTATATATACGCTATCCTATACCTTCAAAAACAACACAAGCCTTCCGAATCCTCAAGCATCAAAGTTCAGATTCATTCTCTGTAAATTTGAGATTGTTCTTCTTCCATAAACAAGCTCAAAAAATGGGTTTCCGTCTACCTGCCATCCGACAAGCATCATCATTCACAGCAAGACAAGCATCTTCAAAATTTGAAGAGATACCAAAGGGCAACTTTGCCGTTTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTGAGTCAAGCTGAGGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTGACCATTCCATGCAGTGAAGATGTCTTCCAACATACAATTTCTTGCTTCAAGGGACAATAA 417 0.3981 MCQHLYIRYPIPSKTTQAFRILKHQSSDSFSVNLRLFFFHKQAQKMGFRLPAIRQASSFTARQASSKFEEIPKGNFAVYVGEKQNRFVIPISYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQHTISCFKGQ 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02449 138 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 63 133 IPR003676 GO:0009733
Vimu5g02449 138 Pfam Auxin responsive protein 56 134 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02449 Vimu-Chr5 35047379 35048774 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02449 63 136 Calmodulin-binding Proteins AT5G20810 47.297 1.49e-18 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02449 K14488 - gmx:100816803 148.288