Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02445 ATGGGAGATGTTATAGTCGATTGTACACTATCTCAACCCAATCCACTTGAAATAGAGAAGACCTCAAAAATGGGTTTCCGTTTACCTACCATCCGAAGGGCATCATTGAAAGCAAGACAAACAACTTCAAAATCTGAAGACATACCAAAGGGCTATTTTGCAGTTTATGTTGGAGAGAAACAAAATCGGTTTGTGATTCCCATCTCTTACTTGAACCAACCTTCATTCCAAGACTTACTGAGTCATGCAGAGGAAGAGTTTGGATATGATCATCCCATGGGAGGCCTCACAATTCCATGCAGTGAAGATGTCTTCCAACATATAATTTCTTGCCTCAAGGGACAATAG 348 0.4052 MGDVIVDCTLSQPNPLEIEKTSKMGFRLPTIRRASLKARQTTSKSEDIPKGYFAVYVGEKQNRFVIPISYLNQPSFQDLLSHAEEEFGYDHPMGGLTIPCSEDVFQHIISCLKGQ 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02445 115 Pfam Auxin responsive protein 32 112 IPR003676 GO:0009733
Vimu5g02445 115 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 40 111 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02445 Vimu-Chr5 35022438 35023587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02445 47 115 Calmodulin-binding Proteins AT3G43120 47.826 2.72e-20 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02445 - K14488 gmx:100816803 156.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02445 5 35022438 35023587 Vimu5g02445 5 35022438 35023587 ECH