Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02443 ATGTCTCTTACAGCTATCCAAGCATCTTCAAAAGCCATGGATGTGCCAAAGGGCTACCTTCCGGTCTATGTTGGAGAGAAAATGAAGAGGTTCTTCATCCCTGTATCATATTTGAACCAACCTTCATTTCAAGATTTGTTGAGTCAAGCTGAGGAAGAATTTGGGTATAACCATCCTATGGGTGGTCTCACAATTCCTTGCAGAGAAGATGTATTCTTAGATACCACCTCTCGTTTGAATAGTATCATAAGAATGGGTTTTCGGTTAGCTGGTATCAGAAAGGCAACCCTGGCTGCGATACAAGGATCTTCAAAAGTCTTGGATGTGCCAAAGGGCTACCTTGCAGTCTATGTTGGAGAGAAAATGAAACGGTTTGTGATCCCTGTATCATATTTGAACCAACCTTCATTTCAAGATTTGTTGAGTCAAGCTGAGGAAGAATTCGGGTATCACCATCCAATGGGTGGTCTCACAATTCCTTGCAGAGAAGATGTGTTCTTAAATACCACTTCTCGCTTGAATAGGTGTTAA 531 0.4162 MSLTAIQASSKAMDVPKGYLPVYVGEKMKRFFIPVSYLNQPSFQDLLSQAEEEFGYNHPMGGLTIPCREDVFLDTTSRLNSIIRMGFRLAGIRKATLAAIQGSSKVLDVPKGYLAVYVGEKMKRFVIPVSYLNQPSFQDLLSQAEEEFGYHHPMGGLTIPCREDVFLNTTSRLNRC 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02443 176 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 103 173 IPR003676 GO:0009733
Vimu5g02443 176 Pfam Auxin responsive protein 9 77 IPR003676 GO:0009733
Vimu5g02443 176 Pfam Auxin responsive protein 97 171 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02443 Vimu-Chr5 35013768 35015777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02443 14 74 Calmodulin-binding Proteins AT4G34750 45.902 1.05e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02443 - K14488 pcin:129286196 245.743