Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02442 ATGGGTTTTCGTTTACCTGGTATCAAAAAGGTATTATTTGCAGCCAATCAAGCATCTTCAAAAGCAGTGGATGCACCAAAGGGCTACCTTGCAGTCTATGTTGGAGAGAAAATGAAACGGTTCATGATCCCTGTGTCTTACTTGAAGGAACCTTCATTTCAGGATTTGTTGAGTCAAGTTGAAGAAGAGTATGGATATGAGCATCCCATGGGTGGCCTCACAATTCCTTGCAGCGAAGATGTCTTCCAACATATCAGTTGGTTCAAGTATCTAATTGGAATCATGAACCTCTTCATTTTTTCTCCAACATACACTGCAAGATACCCTTTTGGGACCACTTTACCATTTGAAGCTGCTTGTCTTGCTCTTCTAATACCAAGTAAATTGAAATCCATGGTTTCTCCTGATTTTTACTCCGACACAACTGCAGAATGA 435 0.4046 MGFRLPGIKKVLFAANQASSKAVDAPKGYLAVYVGEKMKRFMIPVSYLKEPSFQDLLSQVEEEYGYEHPMGGLTIPCSEDVFQHISWFKYLIGIMNLFIFSPTYTARYPFGTTLPFEAACLALLIPSKLKSMVSPDFYSDTTAE 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02442 144 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 18 85 IPR003676 GO:0009733
Vimu5g02442 144 Pfam Auxin responsive protein 16 87 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02442 Vimu-Chr5 35008423 35010087 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02442 24 95 Calmodulin-binding Proteins AT3G43120 48.611 3.35e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02442 - K14488 gmx:100793401 159.458