Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02434 ATGGGTGAAAATGAAGAAGCTACCAATGACATGATGCAGAGGCTTCACTGTTCTTCTTCGTTTCTGAAACAGCCGTTGAACATGGAGCAACTCAGCATCCCGCAGTTCAATCCCTCTCAAATGCGCGCCAGGCATCAGCATCAGTTCGACGGTGGGAACAGTAACAAGCGCGCGGGTATACCACCTTCGCACCCGCACCAGATCCCGCCCATTTCGCCCTACTCTCAGATCCCGGTGACGCGTCAGCAGCAAATGGGGTCGCACAACATTTCCCCTACACCCACCCACACGCGATCACTCTCGCAACCTTCCTTTTTCTCCCTCGATTCCCTCCCTCCCCTCAGCCCTTCCCCCTTCCGAGACTCCTCCTCTACGTCTGTCTCAGAAGCTGCTGACGTGTCCATGGAAGATCGTGACGTCACTTCTCATTCTCTCTTGCCACCCTCACCTTTCGCCAGAACACTCAACACCTCAACCAACAGCAATTTACCTTTACCCCCTCGCAAAGCGCATAGGCGCTCTAACAGTGATATTCCGTTTGGGTTTTCCACCGTTTTGCAATCTTCGCCACCGCTTATTCCTCTCCGGGGCAGAGAAAACCCCGGTTTGGCGAAACCTGCTCAATTGGTCAAAAGAGAAACACTGTGGGACAGGGGTGTTGACCACAGTAATGTAGAGGGATCCGGGGAGAAGAAATCCCCGGAAGGGGAAGTTGTGGATGATCTTTTCTCTGCTTACATGAATTTAGATAGCTTTGATGCGTTGAACTCTTCTGGAACCGATGACAAGAACGGGACTGAAAATCGTGATGATTTGGATAGTAGAGCGAGTGGGACCAAGACTAATGGTGGTGACAGCAGTGATAATGAAGCTGAAAGTAGTGTTAATGAGAGTGGGGATGGTGCGGTGAGGCAGGGAGGGAGTGAGAAGAGGGAAGGGATGAAGAGGAGTGCGGGTGGGGAGATTGCACCCACCACCAGGCACTATAGGAGTGTGTCCATGGATAGTTTCATTTCGAAGTTGAACTTCGGTGATGAGTCGCCGAAGCTGCCACCGTCGCCGGGGCCGAAAACTGGTTTGATTTCGCCTGCTGGTGGAGTTGATGGCAATTCATCGGCCTTCAGCTTGGAATTTGGAAATGGGGAGTTTAGTGGGCCTGAATTGAAGAAAATTATGGCCAATGAAAAACTTGCTGAGATTGCCTTGACCGATCCAAAGCGTGCAAAAAGGATTTTGGCCAACCGGCAATCGGCTGCACGATCCAAAGAGCGGAAGATGCGGTACATATCAGAGCTAGAACATAAGGTTCAGACACTTCAGACGGAAGCCACCACACTATCTGCACAACTTACTCTTTTACAGAGAGATTCTGCTGGACTCACTAACCAGAATAGCGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTCCGAGATGCTCTAAATGAGGCGCTTACTGCTGAGGTTCAAAGACTAAAGCTTGCTACAGCTGAACTCAGTGGGGATTCACATGGTTCTAGCTGTTTGATTCCTCAGCATTCTGTCAACCCTCTGATGTTTCAGCAGCAGCAGCCGCCCACTGCATCCCAACAAAACATTCATCTTCAACATCAACAGCAGCAGCAGCAGCACCAGAATGGTAATGGCAACTCCAATTCCGACATAAAACAATAG 1683 0.5027 MGENEEATNDMMQRLHCSSSFLKQPLNMEQLSIPQFNPSQMRARHQHQFDGGNSNKRAGIPPSHPHQIPPISPYSQIPVTRQQQMGSHNISPTPTHTRSLSQPSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVTSHSLLPPSPFARTLNTSTNSNLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGRENPGLAKPAQLVKRETLWDRGVDHSNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGTENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGAVRQGGSEKREGMKRSAGGEIAPTTRHYRSVSMDSFISKLNFGDESPKLPPSPGPKTGLISPAGGVDGNSSAFSLEFGNGEFSGPELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELSGDSHGSSCLIPQHSVNPLMFQQQQPPTASQQNIHLQHQQQQQQHQNGNGNSNSDIKQ 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02434 560 MobiDBLite consensus disorder prediction 524 560 - -
Vimu5g02434 560 MobiDBLite consensus disorder prediction 26 210 - -
Vimu5g02434 560 MobiDBLite consensus disorder prediction 73 131 - -
Vimu5g02434 560 CDD bZIP_plant_RF2 407 458 IPR044759 GO:0003700|GO:0006355
Vimu5g02434 560 MobiDBLite consensus disorder prediction 26 48 - -
Vimu5g02434 560 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 99 554 - -
Vimu5g02434 560 SMART brlzneu 402 466 IPR004827 GO:0003700|GO:0006355
Vimu5g02434 560 MobiDBLite consensus disorder prediction 343 366 - -
Vimu5g02434 560 MobiDBLite consensus disorder prediction 277 301 - -
Vimu5g02434 560 MobiDBLite consensus disorder prediction 147 165 - -
Vimu5g02434 560 Coils Coil 422 477 - -
Vimu5g02434 560 Pfam bZIP transcription factor 406 464 IPR004827 GO:0003700|GO:0006355
Vimu5g02434 560 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 404 467 IPR004827 GO:0003700|GO:0006355
Vimu5g02434 560 SUPERFAMILY Leucine zipper domain 406 457 IPR046347 GO:0003700|GO:0006355
Vimu5g02434 560 Gene3D - 405 458 - -
Vimu5g02434 560 MobiDBLite consensus disorder prediction 255 328 - -
Vimu5g02434 560 FunFam probable transcription factor PosF21 405 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02434 Vimu-Chr5 34961981 34965222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02434 1 525 bZIP Transcription Factor Family AT4G38900 59.239 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g02434 bZIP_1 2e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02434 - - gmx:780560 850.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02434 5 34961981 34965222 Vimu5g02434 5 34961981 34965222 ECH