Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02430 ATGGCTTCCTTCAGTGGCGATGAGACGGCACCGTTTTTTGGCTTCCTTGGGGCCGCAGCTGCACTCGTCTTCTCCTGTAATTCAATACCTATTTTCTCGATTAGATCTATGTTCTTTCTGCGGTTCAATTGTTTTGTTGGATTCAATTGCGTGGCTGCAAATCGTATGGGAGCTGCCTATGGCACAGCAAAGAGTGGTGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTTCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGTCTTATTATTGCTGTCATCATCAGTACTGGCATTAATCCCAAGGCCAAATCTTATTACCTCTTTGATGGTTATGCACATCTCTCCTCTGGTCTTGCCTGTGGGCTGGCTGGACTCTCTGCTGGAATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGGGTGATACTTAATGCAATCGCTATGCTTTCAATCAATGGACATGTTATCCTTGATGAAATAGCCAATGCACAGCAGCCAAAGCTTTTCGTTGGAATGATTCTCATCCTCATCTTTGCTGAAGCTCTTGCCCTGTATGGTCTCATTGTTGGTATCATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA 642 0.4579 MASFSGDETAPFFGFLGAAAALVFSCNSIPIFSIRSMFFLRFNCFVGFNCVAANRMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRVILNAIAMLSINGHVILDEIANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02430 213 FunFam V-type proton ATPase proteolipid subunit 40 160 - -
Vimu5g02430 213 CDD ATP-synt_Vo_c_ATP6C_rpt2 117 204 - -
Vimu5g02430 213 CDD ATP-synt_Vo_c_ATP6C_rpt1 12 108 - -
Vimu5g02430 213 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 3 209 - -
Vimu5g02430 213 Pfam ATP synthase subunit C 50 104 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu5g02430 213 Pfam ATP synthase subunit C 125 203 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu5g02430 213 Gene3D - 10 210 IPR035921 -
Vimu5g02430 213 NCBIfam V-type ATPase subunit C 54 149 IPR011555 GO:0033179|GO:0046961|GO:1902600
Vimu5g02430 213 SUPERFAMILY F1F0 ATP synthase subunit C 115 204 IPR035921 -
Vimu5g02430 213 PRINTS Vacuolar ATP synthase 16kDa subunit signature 58 82 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu5g02430 213 PRINTS Vacuolar ATP synthase 16kDa subunit signature 135 161 IPR000245 GO:0033179|GO:0046961|GO:1902600
Vimu5g02430 213 PRINTS Vacuolar ATP synthase 16kDa subunit signature 84 108 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02430 Vimu-Chr5 34944660 34945913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02430 1 213 Primary Pumps ATPases(2) AT2G16510 75.587 7.14e-100 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02430 K02155 - qsa:O6P43_019763 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02430 5 34944660 34945913 Vimu5g02430 5 34944660 34945913 ECH