Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02425 ATGCGAACCCTCTGCGACGTATGCGAGAGCGCCGCTGCCATTCTCTTCTGCGCCGCCGATGAGGCTGCTCTCTGCTCTGCTTGTGACCAAAAGCATGTGTTTGCATTGGAGATACAGATCCATATGTGTAATAAACTTGCTAGCAGACACATTCGGGTTGGCCTTGCTGACCCCACTGATGTTCCACGCTGTGACATATGTGAAAATGCACCTGGTACTGAGGCTTTCTTTTACTGTGAGGTAGATGGTAGTTCGCTGTGTCTACAATGTGATATGATTGTGCATGTTGGTGGTAAAAGAACTCATGAAAGATATCTTCTATTGAGGCAAAGAGTTGAGTTTCCAGGTGATAAACCTGCCCAAATGGAAGAACTAGGGCTGCAACCACTGGATCAGAATGAATTTAGGAGGGATGAAAATCAGTTTCTCAAGCTAAAATCAAGAGATAGTCAGCAGAATCACAGCATCTTGCCCGTTCCAAGACAAGAAAATAATATCGATGGTCATAGAAAATTGGATAAAAAGTTAATTGATCTGAACACCAGGCCATTGCGGTTAAATGGACCAGCACCAAACAACCAGGAACAAGGTATGGATATTTTAAGAGGCAGTAATCATGAACTTGCAAATGTGCCACCAGTTGAATCCTACAAACAAGGGGCTGAGAAGTAA 672 0.439 MRTLCDVCESAAAILFCAADEAALCSACDQKHVFALEIQIHMCNKLASRHIRVGLADPTDVPRCDICENAPGTEAFFYCEVDGSSLCLQCDMIVHVGGKRTHERYLLLRQRVEFPGDKPAQMEELGLQPLDQNEFRRDENQFLKLKSRDSQQNHSILPVPRQENNIDGHRKLDKKLIDLNTRPLRLNGPAPNNQEQGMDILRGSNHELANVPPVESYKQGAEK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02425 223 MobiDBLite consensus disorder prediction 146 160 - -
Vimu5g02425 223 CDD Bbox1_BBX-like 4 55 - -
Vimu5g02425 223 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 151 - -
Vimu5g02425 223 MobiDBLite consensus disorder prediction 145 168 - -
Vimu5g02425 223 SMART bboxneu5 59 107 IPR000315 GO:0008270
Vimu5g02425 223 SMART bboxneu5 1 36 IPR000315 GO:0008270
Vimu5g02425 223 ProSiteProfiles Zinc finger B-box type profile. 1 32 IPR000315 GO:0008270
Vimu5g02425 223 ProSiteProfiles Zinc finger B-box type profile. 62 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02425 Vimu-Chr5 34905887 34907953 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02425 1 207 C2C2-CO-like Transcription Factor Family AT2G21320 55.072 6.93e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu5g02425 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02425 - - gmx:100818604 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02425 5 34905887 34907953 Vimu5g02425 5 34905887 34907953 ECH
Vimu10g03451 10 44323442 44324516 Vimu5g02425 5 34905887 34907953 ECH
Vimu5g02389 5 34597911 34598856 Vimu5g02425 5 34905887 34907953 ECH