Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02406 ATGGAAGTTGCGGCGGCAGAAGCGCTGAAACCGAGCTTGCGGACAGAGTTCATCTTCCCGCAAGCAATCTGCGACGAGATTTTTTGTTTCAACGCCAACAACATTGTTGTCGGCGAAGATTTCTCCGTCGACGACCTTCTTGACTTTTCCAACGGCGAATTCCAGCTTGGAAAGGATTTCGATGTGTACGAGGAAGAGGAAGACGAGGAAAAAGACAGCACCTCCGGTTCCTCGCAGGAACGGTCCGAAGACGAGAGCAATTCCAATTCCACCGGCGCTGGTGGCGTCGGCGACTCGGACTCCGTCTTCGCTGGGGAATTATCAGTTCCTGCGGATGATGTGGCGGACCTGGAATGGGTTTCTCATTTTGTAGACGATTCTCTCCCTGAGCTTTCTCTTTTGTACCCTGTCCCTTCGGAACAAACAAGGGTATGGGCCGAACCAAAACCTAGACCGGGACGGGCCCAAAACGGTTCGACGATTCCCAGAAGGCCGAGAACCGGAAAGAGTAGGAAGCCCAACGCTCGCGTGTGGTCTTTTACGGTGTCGCCGCCGTCTTTGTGTTTTTCGGTGTTGGCTGGCTCCGTTGAGTTTGGCGAGCCGACGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAATTGGGGCCCAGTTTCAGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGTCCACTGGGGCCCAAAACACTCTGTAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCTGTAGCCCAACTTTCTCTGGCGATATTCACTCAAATAGTCATCGTAAGGTGTTGGAGATGAGGCGTAGAAAGGAGACCAGCGAACCGCAAACCGGTTCAGACCGGCCTCAACTGGTCCCAAGCTTTTGA 918 0.5458 MEVAAAEALKPSLRTEFIFPQAICDEIFCFNANNIVVGEDFSVDDLLDFSNGEFQLGKDFDVYEEEEDEEKDSTSGSSQERSEDESNSNSTGAGGVGDSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVPSEQTRVWAEPKPRPGRAQNGSTIPRRPRTGKSRKPNARVWSFTVSPPSLCFSVLAGSVEFGEPTAKKQKKKAEAQIGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKETSEPQTGSDRPQLVPSF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02406 305 FunFam GATA transcription factor 211 297 - -
Vimu5g02406 305 PIRSF Txn_fac_GATA_plant 4 304 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vimu5g02406 305 MobiDBLite consensus disorder prediction 143 173 - -
Vimu5g02406 305 MobiDBLite consensus disorder prediction 60 102 - -
Vimu5g02406 305 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 277 - -
Vimu5g02406 305 CDD ZnF_GATA 221 278 IPR000679 GO:0006355|GO:0043565
Vimu5g02406 305 Gene3D - 215 292 IPR013088 GO:0006355|GO:0008270
Vimu5g02406 305 PANTHER GATA TRANSCRIPTION FACTOR 31 294 - -
Vimu5g02406 305 Pfam GATA zinc finger 222 255 IPR000679 GO:0006355|GO:0043565
Vimu5g02406 305 MobiDBLite consensus disorder prediction 80 96 - -
Vimu5g02406 305 SMART GATA_3 216 270 IPR000679 GO:0006355|GO:0043565
Vimu5g02406 305 MobiDBLite consensus disorder prediction 282 305 - -
Vimu5g02406 305 ProSitePatterns GATA-type zinc finger domain. 222 247 IPR000679 GO:0006355|GO:0043565
Vimu5g02406 305 ProSiteProfiles GATA-type zinc finger domain profile. 220 252 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02406 Vimu-Chr5 34750047 34751105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02406 40 287 C2C2-Gata Transcription Factor Family AT4G36240 43.023 3.91e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu5g02406 GATA 3.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02406 - - gmx:100776188 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02406 5 34750047 34751105 Vimu5g02406 5 34750047 34751105 ECH
Vimu10g03663 10 45772432 45773437 Vimu5g02406 5 34750047 34751105 ECH