Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02405 ATGGCTCTTGTTTGGAATTTAGTCATCACTTTCGTAATTCTTGTTCTGCAACAACAATCTTGGGTCCTTGTCACCTTTGCCTCAAGCATTGTCCATATTGTGTATATGGGCGACAACAGAATAAAGCAGAGCGAGCAACACTTGGTTGAAGACTCCCACCTTGACATGCTATCTAGTATACTCGGAAGCAAAGACGCTGCTAGGAAGTCCATCCTGTATAGCTATAGTCATGGCTTTTCTGGATTCGCTGCTGTTTTAAGTCAGCCCCAAGCTAGGCTCATTGCAGATTTCCCAGGGGTTGTCCGTGTAATTCCAAATAAAATTCTCAGTCTTCACACAACAAGAAGTTGGGACTTTTTGAACGTAAAGCAAGAAATAATAACCGGTGCTCTTTCTAGGGGTCAATCTGGAAGAGGAACCATCATCGGCATCATGGACACAGGTATTTGGCCAGAGTCTGAGAGCTTTAGAGATGAGCACATGGACAATCCTCCTCTTCACTGGCGTGGTATCTGCCAAGGAGGAGAAAATTTTGATCACTCCACTTGTAATAGGAAAATTATTGGTGCACGGTGGTACATTAAAGGATACGAAGCTGAAATTGGGAAACTAAATACAAGTGATGGGGTGGAGTACTTGTCTCCTCGAGATGCATCAGGCCATGGCACTCACACATCATCTACTGCAGCTGGTGTTGCAGTGGAAAATGCAAGCTTTATGGGACTAGCTAAAGGGTTGGCAAGAGGTGGTGCTCCATCAGCTTGGTTAGCTGTGTACAAAATTTGTTGGTCTACTGGGGGATGCAGCTCTGCTGATATTCTTGCAGCTTTTGATGATGCAATATTTGATGGGGTTGACATTCTTTCAGCATCTCTTGGCTCAGATCCTCCACTTCCTACTTATGTTGAGGATGCACTGGCCATTGGTTCTTTTCATGCTGTTGCTAAAGGAATTTCTGTGGTATGTTCTGGTGGCAATTCTGGTCCATATTCCCAAACTGTCATAAACACTGCACCTTGGATTATTACCGTTGCAGCTAGTACCATAGACAGAGAATTTCCATCTAGGATTATCCTCGGAAACAATCAAACTCTACAGGGTCAGAGTTTATATACAGGGAAAGATTTGAGTAAGTTTTATCCAATTGTTTTGGGAGAAGACATAGCAGCATCGGATGCTGATGAAGAAAGCGCTAGGGGCTGCAATTCAGGGAGCCTGAATGCCACCTTAGCAAAAGGAAAAGCAATTCTGTGTTTTCAGTCTCGGTCTCAGAGGTCAGCCACAGTTGCTATAAGAACAGTTACGGAAGCTGGTGGCTCTGGTCTCATATTTGCTCAGTTTCCCACTAAAGATGTTGATACATCATGGAGTAAACCCTGTGTCCAAGTTGATTTTATCACGGGAACAACTATTCTATCATACATAGAAGCAACTAGGAATCCTGTAGTAAAGTTTGGCAAAACAAAAACAGTTGTTGGCCAACAGATATCACCAGAAGTGGCATTCTTCTCTTCGCGAGGACCAAGTTCTTTGTCTCCTTCAGTATTGAAGCCTGACATTGCTGCTCCTGGGGTTGATATTCTTGCGGCCTGGTCACCTGCTTCTTCTGCTGGGCGTTTGTTATCTGATGCAAAATCAAAAAAGTTGCAGCCTCTTACCTTCAACTTGGAGTCAGGAACTTCCATGGCATGCCCTCATATTTCTGGTATTGTTGCACTTATAAAAACTGTCCATCCTACTTGGAGCCCAGCTGCAATTAAATCTGCCATTGTCACAACAGCTTCTCTGAAAAATGAATACGATCAATACATCTGGGCCGAGGGAGCACCACATAAACAAGCTGATCCATTTGACTACGGTGGTGGACATGTTGATCCTAACAAAGTGACAGATCCTGGTCTGGTATACGACATGAAAACCTCAGGCTACATTCATTTCCTTTGTTCTATGGACTACAACGACACTGCCATAAGCTCTTTAACAGGATTTCCTACCAAATGCCATAAATCAAACAAATACCTCTTAAACATGAACATCCCTTCTATCGTTATTCCTGAGCTGAAGCAACCCCTCACAGTTTCAAGAACAGTCACTAATGTTGGCCCAGTTCAATCTATCTACACCGCTCGTGTTGAACCTCCAGTCGGCGTATCTGTCACAGTTGTGCCATCAACCTTAACATTTGGTCCCAAAAGAAAGAAAATGAAATTCAAGGTAACTTTTTCTTCCAAGCTACGAATTCAAAGCAGATTCTCATTTGGCTACCTCTTCTGGGAAGATGGGTCACATGAAGTCAGAATGCCATTAGCAGTTCGCTCTGTTGTACAAGAATTTTGA 2337 0.4335 MALVWNLVITFVILVLQQQSWVLVTFASSIVHIVYMGDNRIKQSEQHLVEDSHLDMLSSILGSKDAARKSILYSYSHGFSGFAAVLSQPQARLIADFPGVVRVIPNKILSLHTTRSWDFLNVKQEIITGALSRGQSGRGTIIGIMDTGIWPESESFRDEHMDNPPLHWRGICQGGENFDHSTCNRKIIGARWYIKGYEAEIGKLNTSDGVEYLSPRDASGHGTHTSSTAAGVAVENASFMGLAKGLARGGAPSAWLAVYKICWSTGGCSSADILAAFDDAIFDGVDILSASLGSDPPLPTYVEDALAIGSFHAVAKGISVVCSGGNSGPYSQTVINTAPWIITVAASTIDREFPSRIILGNNQTLQGQSLYTGKDLSKFYPIVLGEDIAASDADEESARGCNSGSLNATLAKGKAILCFQSRSQRSATVAIRTVTEAGGSGLIFAQFPTKDVDTSWSKPCVQVDFITGTTILSYIEATRNPVVKFGKTKTVVGQQISPEVAFFSSRGPSSLSPSVLKPDIAAPGVDILAAWSPASSAGRLLSDAKSKKLQPLTFNLESGTSMACPHISGIVALIKTVHPTWSPAAIKSAIVTTASLKNEYDQYIWAEGAPHKQADPFDYGGGHVDPNKVTDPGLVYDMKTSGYIHFLCSMDYNDTAISSLTGFPTKCHKSNKYLLNMNIPSIVIPELKQPLTVSRTVTNVGPVQSIYTARVEPPVGVSVTVVPSTLTFGPKRKKMKFKVTFSSKLRIQSRFSFGYLFWEDGSHEVRMPLAVRSVVQEF 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02405 778 FunFam subtilisin-like protease SBT1.5 350 492 - -
Vimu5g02405 778 PRINTS Subtilisin serine protease family (S8) signature 217 230 IPR015500 -
Vimu5g02405 778 PRINTS Subtilisin serine protease family (S8) signature 137 156 IPR015500 -
Vimu5g02405 778 PRINTS Subtilisin serine protease family (S8) signature 558 574 IPR015500 -
Vimu5g02405 778 Pfam Subtilase family 137 597 IPR000209 GO:0006508|GO:0008236
Vimu5g02405 778 FunFam Subtilisin-like protease SBT1.5 647 774 - -
Vimu5g02405 778 SUPERFAMILY Subtilisin-like 111 634 IPR036852 GO:0004252|GO:0006508
Vimu5g02405 778 ProSitePatterns Serine proteases, subtilase family, serine active site. 559 569 IPR023828 -
Vimu5g02405 778 ProSiteProfiles Serine proteases, subtilase domain profile. 116 630 - -
Vimu5g02405 778 Gene3D - 647 775 - -
Vimu5g02405 778 CDD Peptidases_S8_3 111 595 IPR034197 -
Vimu5g02405 778 FunFam Subtilisin-like protease SBT5.3 22 112 - -
Vimu5g02405 778 Pfam Peptidase inhibitor I9 31 112 IPR010259 -
Vimu5g02405 778 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 771 IPR045051 -
Vimu5g02405 778 CDD PA_subtilisin_like 357 484 - -
Vimu5g02405 778 FunFam Subtilisin-like protease SBT1.5 139 361 - -
Vimu5g02405 778 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 25 112 IPR037045 -
Vimu5g02405 778 Pfam Fibronectin type-III domain 676 771 IPR041469 -
Vimu5g02405 778 Gene3D Peptidase S8/S53 domain 139 643 IPR036852 GO:0004252|GO:0006508
Vimu5g02405 778 Gene3D - 350 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02405 Vimu-Chr5 34738380 34743997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02405 9 778 Subtilisin-like Serine Gene Family AT4G10540 47.194 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02405 - - gmx:100775442 1347.03