Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02396 ATGAAGAAGACGCTCCCTGCTAACAGGAAAATCGTCAAAGACGCCAAAGAGACTGTTCTGGAGTGCGTCTCGGAGTTCATCGGCTTCATCACCAACGAGGCCTCTGATAAGTGTCAAAGAGAGAAAAGAAAGACTATTAACGGGGACGATTTGCTCTGGGCAATGGCCACCCTTGGTTTCGAGGATTATATCGATTCCTTGAAGATTTACCTCACAAGATACAGAGAGATGGAGGGTGACACCAAGGGCTCAACCAAGGGTGGAGACACATCTGGTAAGAAAGATGTTCAACCGGGTCCTAATGCTCCTTTGTCATCTCCACCAGAAACGCAAATCTGCAGCGCCTCTATGGCTTACTCGTCGCCTTCTAACTTGTGGGCTTTCATCATCATAGATCGATTGCAAACTTCTTAG 414 0.4734 MKKTLPANRKIVKDAKETVLECVSEFIGFITNEASDKCQREKRKTINGDDLLWAMATLGFEDYIDSLKIYLTRYREMEGDTKGSTKGGDTSGKKDVQPGPNAPLSSPPETQICSASMAYSSPSNLWAFIIIDRLQTS 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02396 137 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 96 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu5g02396 137 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 1 55 IPR003958 -
Vimu5g02396 137 MobiDBLite consensus disorder prediction 79 110 - -
Vimu5g02396 137 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vimu5g02396 137 PRINTS CCAAT-binding transcription factor subunit A signature 19 37 - -
Vimu5g02396 137 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vimu5g02396 137 SUPERFAMILY Histone-fold 1 92 IPR009072 GO:0046982
Vimu5g02396 137 Gene3D Histone, subunit A 1 102 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02396 Vimu-Chr5 34678865 34679278 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02396 1 109 CCAAT-HAP3 Transcription Factor Family AT3G53340 74.312 1.22e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu5g02396 CBFD_NFYB_HMF 7.9e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02396 K08065 - gmx:100798667 174.866