Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02382 ATGGAAAACCAATCCTCAGAGATGCACTTTCTTCTCCTCGAAGAGGTTCAGTTTTTGAAGGTCAACGACGATTCTCTCTTGCAGTGGGAGCTCGTCGATGTCGTCGACGCCGAAGAGGAATTCGACGAGTTCGATTCTTCCGATTCTTCCGATTCCTGTCCCAACCGTGCTCCAATTGAAGAAATTCGCCATCTTCTTCTTCGTGAGAGTTTACACGATCACGATGTTGATGGCGAATCGCAAGTCGAATCGGGTTTAGATGTTCGGCACTACGATAATCACCGACGTTACTTTCCCCATCCTGATGCTGATGATGAGGATGAGAATGACGATGATGACGGTGATGATGATGGCTATGGTTTGGATGATGAGCTTGTTCCGTGGACCGTGAGCAACAAGTTCGGGAGACAGAGGATGAGGAAATTGGGGAAAAGGGCATTTTCGAAAATGCACAGCTCCAAAAAATCTCCTTATCTGTTTGTGAGGCCTGGGTTTTGGCGGGAATCTACAAATCATTCCCCGCCATATCTTCCCGTTATTGACCCCTACTCACCAGTTGCCGCGTTTCCTGTATCACTCACTCTTGCTTCTGTATCTGATATTCTCCGAGACAACAAAATCCATGGCTTCCGATTCTTCTCCGAATGCCAACAACGCCCCATCGGCAATACCTTCTCGTCTCCGGGAAGTAGGCGCCGCCGCCGCTCCTCCACTCCCTCCGCATTCGCCACTCCGTCGGAACGTCGATCTCGATTCGCCTCCTCCGAAGCCACCCCAACCGCGCCGCGCTCCCGCCATGGGGCCGGCGGAGGTGGGCGCATTCCTGTCACACCTACCTCCACAACAGATGACGCGGCGGCCTCGTCTGACGGCGGCGATGGCTACGACATGGACGACTCCAGTCCCATGGTGTGGGGCACTAACATACGCGTGGAAGATGTGAACGACGCGATTCAGAGGTTTTTGAGGGACTTTAGGGAAGCGTCTTCGTCGCAGGGTGAGGATGACGGGTTGAACTTGCACACCGAAGGGAAGTATGAGAAATTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGACGTTAATGCGCGTGACGTGTTTGATCATGACCCTGATTTGTACACCAAGATGGTTAGGTACCCTCTTGAGGTGCTTGCTCTCTTTGACTTGGTTTTGATGAATATGGTTAGTCGATTGAAGCCCATGTTTGAGAAGCACATTCAAACTCGGATTTTCAATCTCAAACACTCAACCTCAATGAGAAATTTGAACCCTTCCGATATTGAGAGGATGGTGTCATTGAAAGGAATGATTATAAGGTGTAGTTCAATTATACCTGAAATTAGAGAAGCCATATTTAGATGTCTTGTGTGTGGATTTTGCTGTGACCCAATTCCTGTGGAGAGAGGTAATTTTAATGGGATGACGAATAACGGAGCCCACTATATGTCTGAGGGAAGAATGTCAATCCAGGAACTCCATGTCACTTGTTCACAACCGATGCAGGAGACACCTGACCAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGCTACACGATAAGCTGGTGGATACTGGAAAGCCAGGGGACAGAGTTGAGGTGACTGGTATCTATAGGGCTATGAGTGTTAGGGTTGGGCCAACTCAGAGGACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACCGATAAGTCTAGGATGCAGGTAGAGGACGCAATGGATATTGATAGTGGCCCTGGCAGAAATGAAGAGGAAGTTGTCTTTGAAGAAGACAAAATGGCTCGATTGAAGGAGATCTCAAAACGGCCAGATATATATGAAATACTGACAAAGTCATTGGCACCAAACATCTGGGAGCTAGATGATGTGAAGAAAGGTCTTCTTTGTCAGCTTTTTGGTGGCAATGCATTGAAATTGGCTTCTGGTGCCAGCTTCCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGGACTAGCAAGTCCCAGCTACTCCAATACATACACAAACTATCTCCACGTGGCATTTACACCAGCGGAAGGGGAAGCTCGGCAGTTGGATTGACAGCATATGTAGCCAAGGACCCTGAAACAGGAGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATCTGTTGTATTGATGAATTTGACAAAATGTCTGAAAATGCAAGGAGCATGTTACATGAGGTTGATTACATTCTTCGTCTGCCTATTTTAGCCAATGCTGTGATGGAACAACAAACTGTTTCAATAGCAAAGGCAGGTATAATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGTTCAAGATATAATCCTCGCTTGTCTGTCATCGACAACATACACCTTCCGCCCACACTTCTGTCCAGGTTTGATTTAATCTACTTGATCCTTGACAAGGCTGATGAACAGACTGACAGGCGCCTTGCCAAACATATTGTGTCCCTGCACTTTGACAATCCTGAGAATATGGAGCATGATGTGTTGGATCTTTCTACATTAACAGATTATGTTAGCTATGCCCGAAAGTACATACACCCTCAGCTTTCTGATGAAGCTGCTGAAGAATTGACTAGAGGTTACGTGGAAATAAGGAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCAACCCCGAGGCAGATTGAGAGTGTGATTCGTCTAAGTGAAGCATTGGCTCGTATTCGCTTTTCGGAATGGGTCGAAAAGAATGATGTAACGGAGGCTTTCAGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCACTCTACTGGAACCATTGATATGGATCTTATTACTACTGGAGTGTCGGCAAGTGAGAGGATAAGACGAGAAAGTTTGCTACAAGCAACACGCAACTTAATCATGGAGAAGATGCAGATTGGGGGACCTTCTATGCGGTTATTAGAGTTATTGGAAGAATTGAAGAAACAGGAGACTGGTGTTAGCGAAGTTCATCTCAATGATGTAAGTCTGTAA 3060 0.4641 MENQSSEMHFLLLEEVQFLKVNDDSLLQWELVDVVDAEEEFDEFDSSDSSDSCPNRAPIEEIRHLLLRESLHDHDVDGESQVESGLDVRHYDNHRRYFPHPDADDEDENDDDDGDDDGYGLDDELVPWTVSNKFGRQRMRKLGKRAFSKMHSSKKSPYLFVRPGFWRESTNHSPPYLPVIDPYSPVAAFPVSLTLASVSDILRDNKIHGFRFFSECQQRPIGNTFSSPGSRRRRRSSTPSAFATPSERRSRFASSEATPTAPRSRHGAGGGGRIPVTPTSTTDDAAASSDGGDGYDMDDSSPMVWGTNIRVEDVNDAIQRFLRDFREASSSQGEDDGLNLHTEGKYEKLIRQVIEVEGDSLDVNARDVFDHDPDLYTKMVRYPLEVLALFDLVLMNMVSRLKPMFEKHIQTRIFNLKHSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCCDPIPVERGNFNGMTNNGAHYMSEGRMSIQELHVTCSQPMQETPDQIPEGGTPHTVSLLLHDKLVDTGKPGDRVEVTGIYRAMSVRVGPTQRTVKSLFKTYIDCLHIKKTDKSRMQVEDAMDIDSGPGRNEEEVVFEEDKMARLKEISKRPDIYEILTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSENARSMLHEVDYILRLPILANAVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVSLHFDNPENMEHDVLDLSTLTDYVSYARKYIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESVIRLSEALARIRFSEWVEKNDVTEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERIRRESLLQATRNLIMEKMQIGGPSMRLLELLEELKKQETGVSEVHLNDVSL 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02382 1019 ProSitePatterns MCM family signature. 725 733 IPR018525 GO:0003677|GO:0005524|GO:0006260
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 444 457 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 632 643 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 943 952 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 791 808 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Vimu5g02382 1019 Gene3D - 449 498 - -
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein family signature 782 794 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein family signature 657 672 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein family signature 809 817 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 PRINTS Mini-chromosome maintenance (MCM) protein family signature 758 771 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 Gene3D - 422 556 IPR012340 -
Vimu5g02382 1019 Gene3D - 308 416 - -
Vimu5g02382 1019 MobiDBLite consensus disorder prediction 104 122 - -
Vimu5g02382 1019 ProSiteProfiles MCM family domain profile. 616 835 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 MobiDBLite consensus disorder prediction 221 261 - -
Vimu5g02382 1019 Pfam MCM N-terminal domain 317 415 IPR027925 -
Vimu5g02382 1019 CDD MCM4 619 941 - -
Vimu5g02382 1019 SMART mcm 418 943 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 MobiDBLite consensus disorder prediction 221 301 - -
Vimu5g02382 1019 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 314 992 IPR031327 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 Pfam MCM P-loop domain 604 839 IPR001208 GO:0003677|GO:0005524|GO:0032508
Vimu5g02382 1019 Pfam MCM AAA-lid domain 855 941 IPR041562 -
Vimu5g02382 1019 SUPERFAMILY Nucleic acid-binding proteins 339 567 IPR012340 -
Vimu5g02382 1019 Pfam MCM OB domain 422 546 IPR033762 -
Vimu5g02382 1019 Gene3D - 948 1016 IPR036388 -
Vimu5g02382 1019 FunFam DNA helicase 597 948 - -
Vimu5g02382 1019 MobiDBLite consensus disorder prediction 95 123 - -
Vimu5g02382 1019 Gene3D - 600 947 IPR027417 -
Vimu5g02382 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 955 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02382 Vimu-Chr5 34543970 34550954 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02382 220 1017 Core DNA Replication Machinery Family AT2G16440 69.259 0.0 1101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02382 K02212 - gmx:100782586 1277.31