Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02380 ATGGCTCGGAGACTGCGTTTCTTCAAGGAGCAAATGTTGAAGGCAGGTGTTTCACCAAAATATTCCACAACACCAGTTGATGTGAACATTGATGACCTTGAGGCTGGTGAGTTTTTCCACTCAGCTCAAAGCCGTGCCATAGAGCAGCAGAGAGAATTTGAATCCCGTCATCTGGGGGATGACTCTATGGAAACACCTTTATTACAGGACCAAGAATTGTTAGGTGATTCGTCAAAGCAAGTTAAGTTGGGGTTTTTAGCAGGTCTTGTTCCCAGGGACAAGTCCATGGTATTTGAGAGAATTTTATTTCGTGCTACTAGAGGAAATGTATTTTTAAGGCAGGCTACTGTTGAGCATCCTGTCACAGACCCTGTTTCTGGAGAAAAGAAAAATGTTTTTGTGATCTTCTATGCTGGAGAAAAAGCAAAAGCCAAGATTCTCAAGATATGTGAAGCCTTTGGTGCTAATCGTTACCCTTTTGCTGAGGAACTTGGAAAACAAGCACAAATGATCACAGAGGTCTCTGGAAGACTTTTGGAATTGAAGACCACTATAGATGCTGGACTACATCACCGGGATCACTTGCTAAATACTATTGGGGCTCAATTTGAGCAATGGGATGTTCTGGTGAGGAAGGAGAAATCTATTCATCATACCCTGAACATGCTGAGCCTTGATGTGACGAAAAAATGTCTTGTGGCTGAGGGGTGGAGTCCTGTCTTTGCAAATAAGCAGATCCAGGATGCATTACAGCGGGCAGCATTGGACTCTAATTCTCAAGTCAATGCCATTTTCCAAGTTCTGCATACTAGGGAGTTGCCGCCTACCTTTTTCCGCACAAATAAATTTACTTCTTCTTTTCAAGGAATCATTGATTCATATGGGGTTGCTAAGTATCAGGAGGCAAATCCAACCGTGTATACTGTAGTTACATTTCCGTTCCTTTTTGCTGTTATGTTTGGTGATTGGGGACATGGAATATGTTTACTACTTGCAGCTCTATATTTCATAATCAGGGAGAAGAAACTATCTAGTCAGTCTTCTAACACGGAATCTTGGTGTAAAAAACAGAAGCTTGATGACATCACGGAGATGACTTTTGGAGGTCGTTATGTTATTTTGCTGATGGCGCTGTTCTCAATCTACACTGGCTTTATCTATAACGAGTTCTTTTCTGTTCCATTTCCACTCTTTGCCCCCTCTGCTTATGATTGTCGTGACCTCTCTTGCAGGGATGCTACAACAGTGGGCATGATAAAAGTGCGTGACACTTATCCTTTCGGAGTTGATCCTGTATGGCATGGAACACGAAGTGAACTACCATTTCTGAACTCATTGAAAATGAAAATGTCAATTCTTCTTGGAGTTGCTCAAATGAACCTTGGAATTGTTATGAGCTATTGCAATGCCATATTCTTTAGAAACAGGGTGAATGTGTGGTTCCAGTTCATTCCCCAGATGATATTTCTCAACAGTCTATTTGGCTATCTAGCCCTTCTTATTATTGTGAAGTGGTGTACTGGTTCTCAAGCTGATTTGTACCATATTTTGATCTACATGTTCCTTAGCCCGGCTGATGATTTGGGTGAGAACCAACTCTTTGTTGGTCAGAAGAATTTGCAGCTTGTGCTTTTGCTTCTGGCATTTATCTCTGTCCCCTGGATGCTGTTGCCAAAACCTTTTATCTTAAAGAAGCAACATGAAGCTAGGCACGGGGCTGAATCCTATACACCACTTGAAAGCACAGACGAGAGCTTGCAAGCGGATTCAAACCACGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTACATCAACTTATACATACCATTGAATTTGTGCTTGGAGCAGTGTCTAATACGGCTTCTTACCTCCGTCTATGGGCCCTTAGTCTTGCTCATTCAGAATTATCAAGTGTATTCTACGAGAAGGTTCTGCTGATGGCATGTGGGTACAATAATGTGATAATCCTGATAGTGGGTCTCATTGTTTTCATCTTCGCTACAGTCGGAGTGTTACTTGTCATGGAAACTCTTAGTGCCTTCTTGCATGCGTTACGACTTCACTGGGTGGAATTTCAAAACAAGTTTTACGAGGGCGATGGTTATAAGTTCCACCCTTTCTCGTTCTCCTTACTGGATGATGAGGAATAA 2163 0.4202 MARRLRFFKEQMLKAGVSPKYSTTPVDVNIDDLEAGEFFHSAQSRAIEQQREFESRHLGDDSMETPLLQDQELLGDSSKQVKLGFLAGLVPRDKSMVFERILFRATRGNVFLRQATVEHPVTDPVSGEKKNVFVIFYAGEKAKAKILKICEAFGANRYPFAEELGKQAQMITEVSGRLLELKTTIDAGLHHRDHLLNTIGAQFEQWDVLVRKEKSIHHTLNMLSLDVTKKCLVAEGWSPVFANKQIQDALQRAALDSNSQVNAIFQVLHTRELPPTFFRTNKFTSSFQGIIDSYGVAKYQEANPTVYTVVTFPFLFAVMFGDWGHGICLLLAALYFIIREKKLSSQSSNTESWCKKQKLDDITEMTFGGRYVILLMALFSIYTGFIYNEFFSVPFPLFAPSAYDCRDLSCRDATTVGMIKVRDTYPFGVDPVWHGTRSELPFLNSLKMKMSILLGVAQMNLGIVMSYCNAIFFRNRVNVWFQFIPQMIFLNSLFGYLALLIIVKWCTGSQADLYHILIYMFLSPADDLGENQLFVGQKNLQLVLLLLAFISVPWMLLPKPFILKKQHEARHGAESYTPLESTDESLQADSNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYEKVLLMACGYNNVIILIVGLIVFIFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYKFHPFSFSLLDDEE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02380 720 PIRSF ATP6V0A1 25 720 IPR026028 GO:0000220|GO:0046961
Vimu5g02380 720 MobiDBLite consensus disorder prediction 574 595 - -
Vimu5g02380 720 Pfam V-type ATPase 116kDa subunit family 35 713 IPR002490 GO:0033179|GO:0046961|GO:1902600
Vimu5g02380 720 PANTHER VACUOLAR PROTON ATPASES 1 717 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02380 Vimu-Chr5 34528609 34538613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02380 1 720 Primary Pumps ATPases(2) AT2G21410 71.673 0.0 1135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02380 K02154 - gmx:100783125 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02380 5 34528609 34538613 Vimu5g02380 5 34528609 34538613 ECH