Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02373 ATGAGAAAGGGAGTAGTGGTAGTAGTAGGAAGCAACAGAGACATGAGAAGCTCAGCGTCTTACACGCTATTGCTGTTTCTTTTCGTATGGTTCCGCCTGGCCAAGTGTTCTTCTTTCAGTGACATGGATGCGCTGCTGAAGATGAAGGACTCCATGAAGGGACACAAAGCCAAAGAAGATTCGCTCAGCGACTGGAAGTTTTCCACCTCGCTTTCCGCACACTGTTCATTTTCTGGCGTCCAATGCGACCAGGACCTTCGAGTCGTTGCCATCAACGTCTCCTCCGTTCCACTCTTCGGCCACCTTCCACCGGAGATTGGACAGTTTGACAAACTCCAAAACCTAACCATCTCGCAGGACAACCTCACCGGGGAACTTCCCAAGGAGCTCGCTTCCCTCGCTTCCCTCAAGCTCCTCAACATCTCCCACAACAACTTCTCCGGCAGTTTCCCCGGCCAAATCGTTCTCCCCATGACCCAACTCGAGGTCCTCGACGCCTATGACAACAACTTCACCGGACCGCTTCCGGAGGAATTCGTGAAGCTGGAGAAACTCCGATACCTCAAGCTCGACGGAAATTACTTTTCCGGCAGCATACCGGAGAGATACTCGGAGTTTTTGTGCTTGGAGTTTTTGAGCTTAAGCACTAACAGTCTGTCGGGGAAGATTCCCAAGAGTTTGTCTCGGTTGAAGACGCTGAAGTATCTAAAACTCGGATACAACAACGCTTACGAAGGTGGGATCCCACCGGAGTTCGGAGCCATGAAATCACTGAAATACCTTGACCTTTCCAGCTGCAACCTCAGCGGAGAGATTCCACCGAGCCTGAGCAATTTAAAGAACCTTGACACGTTGTTCTTGCAAATGAACAACCTCACAGGAACCATTCCTTCGGAACTCTCTGCCATGGAGAGCCTCATGTCAATGGATCTCTCCTTCAACGGTCTCACCGGAGTGATTCCTGAGAGTTTCTCCCAGCTGAGAAACCTCACTCTGATGAACTTCTTCCACAACAAGCTGCGCGGTTCTGTTCCCCTCTTCGTCGGCGAGCTTCCGAATCTGGAAACGCTGCAGCTCTGGGAGAACAACTTGTCCTTCGTGCTGCCCCAGAATCTTGGCCAAAACGGGAAGTTCAAGTTCTTCGACGTCACGAGCAATCACTTCACCGGGTTGATCCCTCCGGGTCTTTGCAAGAGTGGGAGGTTACAAACCTTCGTCATCACCAATAACTTCTTCCACGGTCCAATCCCCGATGACATTGGAAACTGCAAGTCTCTCGTCAAGATCCGAGCCTCCAATAACTACCTCAGCGGCGCCATTCCGTCGGGAATTTTCAAACTGCCTTCCGTCAAAATAATCGAGCTCGCCAACAACCGTTTCGACGGCGAACTGCCTCCTGAGATTTCCGGCGATTCTCTCGGGATTCTCACGCTTTCCAACAACTTACTGACGGGGAGAATTCAACCGGCCTTGAAGAACTTGAGGGCACTGCGGACACTCTCACTCGACGCCAACGAGTTCGTTGGAGAAATCCCAGCGGAGGTTTTTGTCTTACCAATACTGACCTCCGTCAACATAAGCGGCAACAATCTCACGGGAGCAATCCCCGCGACGTTGATTCACTGCGTGTCACTCAACTTCGTTGACCTCAGTCGGAACATGCTGGTGGGGGAGATTCCCAAGGGCATAAAAAGCCTGACGAGCTTGAGCGTTTTAAATGTTTCTCAAAACCTGATAACAGGACCAATCCCCGACGAGATTCGCTACATGTCTAGCCTTACAACGCTGGATCTCTCCTACAACAATTTCAACGGCAAGCTCCCAACGGGGGGTCAGTTTTTGGCTTTCAGCGACAGGTCCTTCGCAGGGAACCCCAATCTCTGTTTCTCCCGCTCTTGCACTAGTTCCTCCATGTACCCAGACGACGCATTCCACAAAAGGCGAGGCCCATGGAGTTCGAAATCGACGAGGGTGATAATAAGCGTGATTGCACTAGCCACCGCGGCGCTGCTGGTGGCAGTGACAGTGTACATGATGCGAAGGAGGAAGCTGCTCCGGGCGATGACGTGGAAGCTGACGGCGTTCCAGCGGCTGAACTTGAAAGCGGAGGACGTGGTGGAGTGTCTGAAAGATGAGAACATAATAGGAAAAGGAGGGGCGGGGATCGTGTACCGGGGGTCGATGCCGAACGGAAGCGACGTGGCAATAAAGCGGTTGGTCGGGGCGGGTAGCGGGAGGAACGATTACGGGTTCAGGGCGGAGATAGAGACGCTGGGGAAGATAAGGCACAGGAACATAATGAGGCTTCTGGGTTACGTGTCGAACAAGGAGACGAATTTGCTGCTGTACGAGTACATGCCGAATGGAAGCTTAGGGGAATGGCTGCATGGAGCGAAAGGAGGGCATTTGAGATGGGAGATGAGGTTCAAGATTGCAGTTGAAGCTGCAAGAGGGCTCTGTTACTTGCACCATGATTGTTCTCCTCTCATCATTCACAGAGACGTCAAATCCAACAATATATTGCTCGACGCCGACTTCGAGGCCCATGTCGCCGATTTCGGACTCGCCAAGTTCCTCCACGACCCCGGTGCCTCTCAGTCCATGTCCTCCATCGCCGGCTCCTACGGCTACATTGCTCCAGAGTATGCATACACGCTGAAAGTGGATGAGAAAAGCGATGTGTACAGTTTCGGGGTGGTGCTGTTGGAGCTGATAATAGGGAGGAAGCCGGTGGGGGAGTTTGGAGATGGAGTGGACATCGTTGGATGGGTGAACAAGACGAGAATGGAGATATCTCAGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGATCCACGGCTGAGTGGGTATCCATTGACAAGTGTCATTTACATGTTCAACATTGCCATGATGTGTGTTAGGGAAATGGGCCCCGCCAGGCCCACCATGAGGGAAGTCGTTCATATGCTCACGAATCCTCCTCACTCCACCACTCACTCACACTCACAATCTCATTAA 3000 0.5227 MRKGVVVVVGSNRDMRSSASYTLLLFLFVWFRLAKCSSFSDMDALLKMKDSMKGHKAKEDSLSDWKFSTSLSAHCSFSGVQCDQDLRVVAINVSSVPLFGHLPPEIGQFDKLQNLTISQDNLTGELPKELASLASLKLLNISHNNFSGSFPGQIVLPMTQLEVLDAYDNNFTGPLPEEFVKLEKLRYLKLDGNYFSGSIPERYSEFLCLEFLSLSTNSLSGKIPKSLSRLKTLKYLKLGYNNAYEGGIPPEFGAMKSLKYLDLSSCNLSGEIPPSLSNLKNLDTLFLQMNNLTGTIPSELSAMESLMSMDLSFNGLTGVIPESFSQLRNLTLMNFFHNKLRGSVPLFVGELPNLETLQLWENNLSFVLPQNLGQNGKFKFFDVTSNHFTGLIPPGLCKSGRLQTFVITNNFFHGPIPDDIGNCKSLVKIRASNNYLSGAIPSGIFKLPSVKIIELANNRFDGELPPEISGDSLGILTLSNNLLTGRIQPALKNLRALRTLSLDANEFVGEIPAEVFVLPILTSVNISGNNLTGAIPATLIHCVSLNFVDLSRNMLVGEIPKGIKSLTSLSVLNVSQNLITGPIPDEIRYMSSLTTLDLSYNNFNGKLPTGGQFLAFSDRSFAGNPNLCFSRSCTSSSMYPDDAFHKRRGPWSSKSTRVIISVIALATAALLVAVTVYMMRRRKLLRAMTWKLTAFQRLNLKAEDVVECLKDENIIGKGGAGIVYRGSMPNGSDVAIKRLVGAGSGRNDYGFRAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLRWEMRFKIAVEAARGLCYLHHDCSPLIIHRDVKSNNILLDADFEAHVADFGLAKFLHDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWVNKTRMEISQPSDAALVLAVVDPRLSGYPLTSVIYMFNIAMMCVREMGPARPTMREVVHMLTNPPHSTTHSHSQSH 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02373 999 Gene3D Transferase(Phosphotransferase) domain 1 786 998 - -
Vimu5g02373 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vimu5g02373 999 Gene3D Ribonuclease Inhibitor 156 243 IPR032675 -
Vimu5g02373 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 353 985 - -
Vimu5g02373 999 Pfam Protein tyrosine and serine/threonine kinase 712 982 IPR001245 GO:0004672|GO:0006468
Vimu5g02373 999 SUPERFAMILY L domain-like 382 629 - -
Vimu5g02373 999 Gene3D Ribonuclease Inhibitor 244 344 IPR032675 -
Vimu5g02373 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 243 347 - -
Vimu5g02373 999 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Vimu5g02373 999 Pfam Leucine rich repeat 281 340 IPR001611 GO:0005515
Vimu5g02373 999 Pfam Leucine rich repeat N-terminal domain 40 83 IPR013210 -
Vimu5g02373 999 SUPERFAMILY Protein kinase-like (PK-like) 699 984 IPR011009 -
Vimu5g02373 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 678 785 - -
Vimu5g02373 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 786 999 - -
Vimu5g02373 999 SMART LRR_typ_2 303 326 IPR003591 -
Vimu5g02373 999 SMART LRR_typ_2 590 623 IPR003591 -
Vimu5g02373 999 SMART LRR_typ_2 255 279 IPR003591 -
Vimu5g02373 999 SMART LRR_typ_2 494 518 IPR003591 -
Vimu5g02373 999 SMART LRR_typ_2 566 589 IPR003591 -
Vimu5g02373 999 SMART LRR_typ_2 351 375 IPR003591 -
Vimu5g02373 999 SMART LRR_typ_2 447 471 IPR003591 -
Vimu5g02373 999 Pfam Leucine Rich repeat 591 605 IPR001611 GO:0005515
Vimu5g02373 999 Pfam Leucine Rich Repeat 257 279 IPR001611 GO:0005515
Vimu5g02373 999 SUPERFAMILY RNI-like 91 413 - -
Vimu5g02373 999 Gene3D Ribonuclease Inhibitor 40 155 IPR032675 -
Vimu5g02373 999 Gene3D Phosphorylase Kinase; domain 1 675 785 - -
Vimu5g02373 999 FunFam Leucine-rich repeat receptor-like protein kinase 38 201 - -
Vimu5g02373 999 SMART serkin_6 709 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02373 999 FunFam LRR receptor-like serine/threonine-protein kinase EFR 348 638 - -
Vimu5g02373 999 ProSiteProfiles Protein kinase domain profile. 709 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02373 999 Gene3D Ribonuclease Inhibitor 345 638 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02373 Vimu-Chr5 34497415 34501403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02373 36 993 Receptor kinase-like Gene Family AT1G75820 60.688 0.0 1192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu5g02373 PK_Tyr_Ser-Thr 1.6e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02373 - - gmx:732625 1628.22