Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02360 TTGCAGGCACCAAAGAAGGACAAGGCTCCTCCACCTTCCTCCAAGCCCGCCAAATCTGGCGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGAAAGCAAAAGGAGAAGGTGAATAACATGGTGCTGTTTGACCAGGGCACCTATGACAAACTCCTCTCAGAAGCGCCCAAATACAAGCTCATCACTCCTTCAATTCTCTCTGATCGTTTGAGGATTAATGGATCACTTGCAAGGAAGGCTATAAGAGAACTGATGGCTAGAGGTTCAATCAGGATGGTGTCTGCCCATGCCAGTCAGCAAATTTACACCAGGGCAACAAACACCTAA 330 0.4848 MQAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAHASQQIYTRATNT 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02360 109 MobiDBLite consensus disorder prediction 1 37 - -
Vimu5g02360 109 PANTHER 40S RIBOSOMAL PROTEIN S25 3 109 IPR004977 -
Vimu5g02360 109 Gene3D - 22 109 - -
Vimu5g02360 109 FunFam 40S ribosomal protein S25 22 109 - -
Vimu5g02360 109 Pfam S25 ribosomal protein 8 106 IPR004977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02360 Vimu-Chr5 34382183 34383319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02360 3 108 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 92.453 8.51e-55 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02360 K02975 - gmx:100499810 162.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02360 5 34382183 34383319 Vimu5g02360 5 34382183 34383319 ECH