Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02344 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATCACAGTGTTGGAAAGACAAAGGGAAGCAACCACGAAGTGGCAAAACCACCATCACGACAATCACCCACCTTACTATTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAATCTTCCTCAGAGTCAGGGCTTGGTCATGGCGCGTGAACGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCTCCGAATTGGACACCGGATTTGGATCCTCTTCCGGTTTCTTACCCAAGGAAAACGATAAGAAGAGGAAGGCGCTGAACTACAAGGTTGCTGCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGGCGAGGAAGGAGAATCCCGAGTGACAAACCAAACCAGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACCTCTGCGGATTCTTCCAAGAATAATTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGTGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTCGAGTTCTTATCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGCGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGTATCAGATATGAGTATGTGTAACAATCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATAAGCCCTCCGAATATGGGAGTTCGAAGGAACATTAGTACTACACATGTACCTTTGCCTGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGAAGGTGATTTTCAAAGCCTTTACAATGTTGCTTTTGATCAAGGGAAAGCAGGAGCAGCATCCTTTCCTTCTCAGCCATTTACAGGTAGCTACAAATTTATGACTTGTCAAATCACTGTTTTTTTTTCTAAGCCTGATATCCTTAAAGTAGAAAGTAGAAGCACAGCAGAGTGGATTTTAATGGGTGATCGAGACAAGAGATTGAAACTAGCAATCCGAAGATGGAGATGTAAAGCAGATTATCCATTTGATTTTGTTGGATTGGCTCAGGCCGAAGAACTTTATGGAGATTTTTTCTAA 1362 0.4383 MLHCLNGSGNLGASCSDITVLERQREATTKWQNHHHDNHPPYYSATEFHVNLVFSSSSNNLPQSQGLVMARERDDSALSQVLAHSLKPDPGLCSELDTGFGSSSGFLPKENDKKRKALNYKVAAESDNKDKRVKVSGEEGESRVTNQTSNRNGKSNANKNNRETSADSSKNNSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREAFPSCGQGLPNIGMVSDMSMCNNPSYVQLNSTQQLVSCCGGLINNVGISPPNMGVRRNISTTHVPLPEAFIDSSCFTQILPSSNWEGDFQSLYNVAFDQGKAGAASFPSQPFTGSYKFMTCQITVFFSKPDILKVESRSTAEWILMGDRDKRLKLAIRRWRCKADYPFDFVGLAQAEELYGDFF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02344 453 FunFam Basic helix-loop-helix transcription factor 191 263 - -
Vimu5g02344 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 264 IPR036638 GO:0046983
Vimu5g02344 453 CDD bHLH_AtBPE_like 184 263 - -
Vimu5g02344 453 SMART finulus 200 250 IPR011598 GO:0046983
Vimu5g02344 453 MobiDBLite consensus disorder prediction 121 139 - -
Vimu5g02344 453 MobiDBLite consensus disorder prediction 121 182 - -
Vimu5g02344 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Vimu5g02344 453 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Vimu5g02344 453 MobiDBLite consensus disorder prediction 140 179 - -
Vimu5g02344 453 Gene3D - 191 265 IPR036638 GO:0046983
Vimu5g02344 453 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 107 290 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02344 Vimu-Chr5 34293969 34296285 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02344 5 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 37.632 1.28e-53 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g02344 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02344 - - vun:114168601 718.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02344 5 34293969 34296285 Vimu5g02344 5 34293969 34296285 ECH
Vimu5g02344 5 34293969 34296285 Vimu7g02932 7 24678002 24679497 ECH