Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02341 ATGTTTGTTTCTTGTCAAAAATACAACCCCTACTTTCCCTGTTCCTCGTTTCCACTGCACAACCCAACAACAACATGCACCATTTTCAATTGCCAAAACCCAAAGGAGCATCACTCCATTATCCGGAAGCACAATTCCAAATCCACTGCCTATCTCCTTCAGCATCTCGCTCTCAAAGATGGGGTACCCATTTCCACTTCCATTCCCAAACCCAGCGAACTTCTAGACCCAATGCCCCACGATGAGAAAGTTAAGGTTTTGGAGCTTTCCCTCGTCAGAAAAAGGACCCCTCAGTTTCCCGGTTCCATCTACGCTCAATCTCCCGGCGACCCTGATGTGGGTTCTTCTCTGCCCCCTATCCGCACTCTCTTTCAATCAGGTGTGGACCCTGATGATAAAGATGAGAAGGAAGAGGAGGAGGAGGAGATGATTATGCGCGCTCTCGAGATTCGAAGAAAGGTCACCGAAGAGGTTTTCAAAGAAGCCATGCGGAAGGGGAAGTTTGGAATCACCTACTCTATTAATTTGATTGGCAGGTTATCCGGCTTTCTGGATCATATCATGATTGAAGCTGCTAACTTGAAAAGATTGCCCGGGTTTTCAAACTCCTCCTTCAATTTACGCGCCAAAACTGTTATAGACGACTCTAAAGTTGTTCCACTTATTAGATGGTTGAAGCACAATGCACTGTCGTATCCTCGGATAGCGAAGGTCATTTTGATGTCAAGAGGAAAACCTGAGGCCATAAGAAGTTTTGTCATGTGGTTGAAATCGGTACGTGTGAAAGGTGAGTTTCTTGGTGTTGTAATGTTGAAGGCCGGAGATAATATTTTGCAGCGCAGACATGAGGAGCTGGATGAGATTGTTCAATATTTGGAATCCAATGGAGTAAGGAGGGATTGGATGGGTTATGTCATTAGTCGTTGTCCTCAGTTATTGTCTTACAGCTTAGAAGAAGTGAAGATTCGTGCCCATTTCTTCCTAGATATGGGTTTAAATGAGAAGGATTTTGGGACAATGGTTTTTGATTTTCCCAGAGTTCTTGGTTACTATTCTCTCGAAGAAATGAATGAAAAGGTTAATTACTTAAAAGAATTTGGGCTTCAACTTGAGGATGTGGGCAAATTACTTGCATTTAGGCCACAACTGATGGCGTGCAGTATCGAGGAACATTGGAAGCCTCTTGTAAAGTATCTGTATTACTATGGGATCACTCGAGATGGCATGAAGAGGATGCTTATCATTAAACCAATGGTGTTTTGTGCTAACTTGGAGAAGACTATTGTGCCAAAGGTAAAATTTTTTGAGGACATAGGGGTTCACAATGAAGGGATTGGCAGCATGCTTGTGAAGTTTCCACCTCTACTCACTTACAGTCTGCACAAGAAAATTAGACCAGTGGTTATATTCTTGATGACCAAAGCTGGAGTCAAGGAGAAAGATATTGGCAAGGTTGTGGCTCTTGGACCGGAGCTCTTGGGATGCAATATAGTACATAAGCTTGATGTGAATGTAAAATATTTTTTATCTCTTGGCATACGTCTTCGGCAATTGGGTGAGATGATTACTGATTTCCCGTTGCTGCTCAGATACAATCCAGATGTCCTTCGTCCCAAGTATATTTATTTGCGAAAATCCATGGTCAGGCCTTTGGAAGATGTCATTGAGTTTCCAAGGTTTTTCAGTTATTCTCTTGAGGGTCGAATTATCCCAAGGCACAAGGTTCTAGTGGAGAACCATATTAATATTAAGCTGAGATACATGTTGGCTAGCACTGACGAAGAATTCCACAAAATGGTTAAGGACTTAATTGGAAAGCGCAGAAGATTTGAATCTGCTGTCACAAATGAGGGTACTACCCATCCACAATCTGTTATTACTGAAGACATTTCTACACCCCAGGCATAA 1908 0.4256 MFVSCQKYNPYFPCSSFPLHNPTTTCTIFNCQNPKEHHSIIRKHNSKSTAYLLQHLALKDGVPISTSIPKPSELLDPMPHDEKVKVLELSLVRKRTPQFPGSIYAQSPGDPDVGSSLPPIRTLFQSGVDPDDKDEKEEEEEEMIMRALEIRRKVTEEVFKEAMRKGKFGITYSINLIGRLSGFLDHIMIEAANLKRLPGFSNSSFNLRAKTVIDDSKVVPLIRWLKHNALSYPRIAKVILMSRGKPEAIRSFVMWLKSVRVKGEFLGVVMLKAGDNILQRRHEELDEIVQYLESNGVRRDWMGYVISRCPQLLSYSLEEVKIRAHFFLDMGLNEKDFGTMVFDFPRVLGYYSLEEMNEKVNYLKEFGLQLEDVGKLLAFRPQLMACSIEEHWKPLVKYLYYYGITRDGMKRMLIIKPMVFCANLEKTIVPKVKFFEDIGVHNEGIGSMLVKFPPLLTYSLHKKIRPVVIFLMTKAGVKEKDIGKVVALGPELLGCNIVHKLDVNVKYFLSLGIRLRQLGEMITDFPLLLRYNPDVLRPKYIYLRKSMVRPLEDVIEFPRFFSYSLEGRIIPRHKVLVENHINIKLRYMLASTDEEFHKMVKDLIGKRRRFESAVTNEGTTHPQSVITEDISTPQA 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02341 635 SMART mt_12 410 441 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 SMART mt_12 303 333 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 SMART mt_12 483 514 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 SMART mt_12 374 405 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 SMART mt_12 446 478 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 SMART mt_12 551 582 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 SMART mt_12 519 550 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 SMART mt_12 338 369 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 PANTHER CGI-12 PROTEIN-RELATED 277 369 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 Pfam mTERF 234 365 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 Pfam mTERF 355 596 IPR003690 GO:0003690|GO:0006355
Vimu5g02341 635 MobiDBLite consensus disorder prediction 614 635 - -
Vimu5g02341 635 Gene3D Transcription termination factor 3, mitochondrial 380 603 IPR038538 -
Vimu5g02341 635 MobiDBLite consensus disorder prediction 615 635 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu5g02341 mTERF 1.3e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02341 K15031 - qsa:O6P43_001902 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02341 5 34262222 34265179 Vimu5g02341 5 34262222 34265179 ECH