Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02337 ATGACTGAGGCCGGCACAACCACGGGTGTCAGCTTGAAGCTTCTCGTGTTGGTGGCTATTTTGGTCGTCTTCGCGGTGGTGATTCTGGTTCTCGTCTTCTTCCTGTGCTTGCGGGGCGGCCGGAGCTGGAAGCGGCGGAAGCTGGCGGCGAAACACAGCTCCGGGAGCATCCCTCTGGTGTCGAAGGAGATCATGGTGGTTAAGACCTCGGATCTCACCCCTGCCACGACGAGCGAGATTGGTGACGTGGAGGGTGATCCGAAGAAGGAGGCGGGCATGAAGGTCGAGATTGAAGCGGTGACAGCAGTGATGAAGAGCGAAGTTTCCGGTGGCGGGGCCCACCGCAGCGAGGTGTCGGTGGAGGATCCGAACATAGGGTGGGGTCGGTGGTACAGCATGAAGGAAGTGGAACTCGCCACGCGCGGTTTCGCAGAAGGGAATGTTATTGGAGAAGGTGGGTACGGTGTTGTGTACAGAGGAATTCTGCACGATGCTTCCGTCGTTGCTGTCAAGAATCTTCTCAACAACAAGGGTCAGGCAGAGAAGGAGTTCAAGGTAGAGGTTGAAGCTATTGGAAAAGTACGGCATAAGAATTTGGTTCGTTTGGTGGGATATTGCGCAGAAGGTGCTCGAAGGTATTGCTCTACCATAGAAGTTCAGAATTCCTATGAATTTTCTTCAGTAACAATTTTACTATCATTCAGGATGCTTGTTTATGAGTATGTTGACAACGGAAACTTAGAACAGTGGCTGCATGGTGATGTAGGACCAGTTAGCCCCTTGACATGGGATATTCGAATGAGAATTGCTATTGGGACAGCAAAAGGGCTAGCCTATTTGCATGAAGGCTTAGAACCCAAAGTTGTGCACCGGGATATAAAATCCAGTAACATTCTGTTAGATAAAAACTGGAATGCCAAGGTATCAGATTTTGGACTTGCCAAACTCTTAGGATCTGAGAAAACGCATGTGACTACGCGTGTAATGGGAACATTCGGATATGTTGCACCTGAGTATGCAAGCTCAGGTATGCTTAATGAGCGCAGTGATGTGTATAGCTTTGGAGTTCTACTCATGGAGATAATAACAGGAAGAAGCCCCATTGATTATTCAAGACCACCTGGAGAGATGAATTTAGTAGATTGGTTCAAGGCAATGGTGGCAAGTCGTCGCAGTGAGGAGCTAGTTGATCCGTTGGTTGAGATTCCACCCTCTCCAAGATCTTTGAAACGAGTTTTACTGATTTGTCTGCGGTGTATAGACTTGGATGTCGTTAAACGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGACAGATGATTTCCCCTTTCGTTCTGAGCTACGCACAGTTAGAGAGAAAGATCCTTTGCCTTCTCATGCAGATGTTTCCATTAAAGTTCCTTATCCACCACCAAAGCATGCAGAAACCGTAGAAAAATCAAGATGGAGATGA 1455 0.4797 MTEAGTTTGVSLKLLVLVAILVVFAVVILVLVFFLCLRGGRSWKRRKLAAKHSSGSIPLVSKEIMVVKTSDLTPATTSEIGDVEGDPKKEAGMKVEIEAVTAVMKSEVSGGGAHRSEVSVEDPNIGWGRWYSMKEVELATRGFAEGNVIGEGGYGVVYRGILHDASVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVRLVGYCAEGARRYCSTIEVQNSYEFSSVTILLSFRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMRIAIGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKNWNAKVSDFGLAKLLGSEKTHVTTRVMGTFGYVAPEYASSGMLNERSDVYSFGVLLMEIITGRSPIDYSRPPGEMNLVDWFKAMVASRRSEELVDPLVEIPPSPRSLKRVLLICLRCIDLDVVKRPKMGQIVHMLETDDFPFRSELRTVREKDPLPSHADVSIKVPYPPPKHAETVEKSRWR 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02337 484 SMART serkin_6 143 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02337 484 PANTHER OS01G0323000 PROTEIN 7 454 - -
Vimu5g02337 484 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Vimu5g02337 484 FunFam Putative receptor-like serine/threonine-protein kinase 242 452 - -
Vimu5g02337 484 SUPERFAMILY Protein kinase-like (PK-like) 121 439 IPR011009 -
Vimu5g02337 484 CDD STKc_IRAK 149 438 - -
Vimu5g02337 484 ProSiteProfiles Protein kinase domain profile. 143 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02337 484 ProSitePatterns Protein kinases ATP-binding region signature. 149 171 IPR017441 GO:0005524
Vimu5g02337 484 Gene3D Transferase(Phosphotransferase) domain 1 242 448 - -
Vimu5g02337 484 Gene3D Phosphorylase Kinase; domain 1 113 214 - -
Vimu5g02337 484 MobiDBLite consensus disorder prediction 459 484 - -
Vimu5g02337 484 FunFam Probable serine/threonine-protein kinase At1g01540 123 216 - -
Vimu5g02337 484 Pfam Protein kinase domain 145 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02337 Vimu-Chr5 34234141 34237248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02337 4 440 Trihelix Transcription Factor Family AT1G70460 40.406 1.95e-92 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vimu5g02337 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02337 - - gmx:100305442 760.37