Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02320 ATGACTCAGGGAAAGGGAGTTGAAGCTGGCCAAATTGTGGGGGATTTCAATCCTTCCAAGAAGCCCAAAAGAAACAAGTATGCTTTTGGTTGCGCTATTTTGGCCTCCATGACATCCATTTTACTTGGCTATGATATCGGGGTGATGAGTGGTGCAGCCATGTACATAAAGAGGGACCTAAAGGTGTCGGACGTGCAAATCGAGATACTCTTGGGAATCATCAATCTCTACTCTCTTATAGGCTCATGCTTGGCCGGCAGAACCTCCGACTGGATAGGCCGGCGATACACCATTGTCTTCGCCGGCACCATCTTCTTCGCCGGGGCAATTCTCATGGGTTTCTCTCCCAACTATGCCTTTCTGATGTTCGGCCGTTTCGTGGCCGGCATCGGCATCGGCTACGCCCTCATGATCGCCCCTGTCTACACCGCCGAAGTCTCTCCGGCGTCAACCCGTGGCTTCCTCACTTCCTTTCCCGAGGTTTTTATTAATGGAGGGATATTACTCGGATACATATCCAACTATGCATTTTCAAAGTTGTCATTGAAGTTGGGATGGCGAATGATGCTTGGGGTCGGTGTGTTTCCCTCGATACTCCTGACATTGGGAGTGTTGGCGATGCCGGAATCTCCGCGGTGGCTGGTGATGAGGGGACGTTTGGGAGAGGCAACGAAAGTGCTTAACAAAACCTCCGACAGCAAGGAAGAAGCTCAACTGAGGCTGGCCGAGATCAAGCAAGCCGCAGGGATACCGGAGAGTTGCAACGACGACGTCGTTGAGGTAACGAAAAAAAGCACCGGCGAGGGCGTGTGGAAAGAGTTGTTCCTCCATCCAACGCCTGCGATTCGTCACATCGTAATTGCGGCGCTGGGGATTCACTTCTTCCAACAAGCGTCGGGTGTGGACGCCGTGGTTTTATACAGCCCCACGATCTTCGAGAAGGCTGGGATCACCGATGACACACAAAAGCTTCTGGCAACGGTGGCCGTTGGATTCGTGAAGACGATATTCATCTTGGTTGCTACTTTCATGTTGGACCGGGTGGGTCGTCGTCCCCTGTTATTGTCTAGTGTGGGGGGCATGGTAATCTCGCTTCTGACTCTGGCAATCAGCCTTACGATCATCGATCAGTCGAAGAGTAAACTGATGTGGGCCATTGGATTGAGTATAACGATGGTATTAACCTACGTGGCGACGTTTTCCATCGGTTCGGGACCCATCACGTGGGTGTACAGCTCTGAGATCTTTCCGTTGAGGTTGCGGGCGCAGGGTGCGGCAGCGGGTGTGGTGGTGAACAGAACGACAAGTGGCGTTATTTCAATGACTTTTTTGTCCCTGACTAAAGCCATCACTATTGGCGGAGCTTTCTTCCTGTATTTTGGCATTGCTACCATTGGGTGGTTATTCTTCTACACCGTGCTTCCTGAGACACGGGGTAAAACACTTGAAGACATGGAAGGTTCTTTTGGTACTTTCAGAGCCAAATCCAACAACACCAACAACAATGGAATAGAAAATGAAAATGCCAAAGTTTCACAACTTCAGCTCGGGACCAATCTCCAGCCGTAG 1569 0.5086 MTQGKGVEAGQIVGDFNPSKKPKRNKYAFGCAILASMTSILLGYDIGVMSGAAMYIKRDLKVSDVQIEILLGIINLYSLIGSCLAGRTSDWIGRRYTIVFAGTIFFAGAILMGFSPNYAFLMFGRFVAGIGIGYALMIAPVYTAEVSPASTRGFLTSFPEVFINGGILLGYISNYAFSKLSLKLGWRMMLGVGVFPSILLTLGVLAMPESPRWLVMRGRLGEATKVLNKTSDSKEEAQLRLAEIKQAAGIPESCNDDVVEVTKKSTGEGVWKELFLHPTPAIRHIVIAALGIHFFQQASGVDAVVLYSPTIFEKAGITDDTQKLLATVAVGFVKTIFILVATFMLDRVGRRPLLLSSVGGMVISLLTLAISLTIIDQSKSKLMWAIGLSITMVLTYVATFSIGSGPITWVYSSEIFPLRLRAQGAAAGVVVNRTTSGVISMTFLSLTKAITIGGAFFLYFGIATIGWLFFYTVLPETRGKTLEDMEGSFGTFRAKSNNTNNNGIENENAKVSQLQLGTNLQP 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02320 522 Gene3D MFS general substrate transporter like domains 21 491 IPR036259 -
Vimu5g02320 522 PRINTS Sugar transporter signature 390 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 PRINTS Sugar transporter signature 122 141 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 PRINTS Sugar transporter signature 413 425 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 PRINTS Sugar transporter signature 39 49 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 ProSitePatterns Sugar transport proteins signature 1. 85 102 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 CDD MFS_PLT 34 485 IPR044776 GO:0005351
Vimu5g02320 522 NCBIfam sugar porter family MFS transporter 23 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 ProSiteProfiles Major facilitator superfamily (MFS) profile. 31 478 IPR020846 GO:0022857
Vimu5g02320 522 FunFam probable polyol transporter 4 21 492 - -
Vimu5g02320 522 Pfam Sugar (and other) transporter 31 487 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 26 489 IPR045262 GO:0015144
Vimu5g02320 522 ProSitePatterns Sugar transport proteins signature 2. 127 152 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu5g02320 522 SUPERFAMILY MFS general substrate transporter 19 486 IPR036259 -
Vimu5g02320 522 Coils Coil 227 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02320 Vimu-Chr5 34116246 34118261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02320 18 521 Organic Solute Cotransporters AT3G18830 70.693 0.0 754
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02320 - - gmx:100800461 884.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02320 5 34116246 34118261 Vimu4g00373 4 2648598 2649098 PCT