Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02316 ATGGTTCTTCCCTTCCATGATGAATGTGTTTGTATATTCAAAATTTTGCAGGTTGGTCAGAGTTCTCTATTAGCTTCTCCGAATACACTACAAAGGACTTCTGCTGAAAACAACATGCGTTTCAAGAACCATTCTTACAAGAAGATCTCACAACCTACAAGTAACGTAACTCCCAAAGCCAAAGAAAATGAAAGAAGGCCTTCAATCCAAGGAATCAACTTGAAAGGATCAACAAAGAGGTACGTTTGTTCTGCTGGTGAATATCTCCATTACATTTTTCCAACCGTTTCAAAGTTTGTGCACGGTGTGACCAGTGAAAGCAAGCAAAGAACTGCTGTAGTCAATGATAATAAGAATGACGGTGGATCAACAAAGGTGGATATACATCTTCGCAATCGGCAGGATATTCGTTCAGCTAAGCAACAACAATCCAGGATGATGCCTGGAACTGATAACTTCGAAGCAAATCCAAGTGATCCGAATCAGAATTTGCATATAGACCTCAGTGCATCTTCCGCTAATCCTGTACTTGAAGAGATATCCGTACACTGGCCCGTTAAGCATGTGTCTCGAACTTCTGAATTGATTATAAATAAAAATTCCACCATCTTATTAGCCAATGTTTTCACCATCATAGTTCATAATGCTTATAAGCATGGTTCCTTTCAGCTGGTGGATATCTTTTCAGCTAAGCATGAAAAATCCAGTATGACAGTCAGAAATGGGGGAGCTGCAAACAATGTGACTAGTATTGAAAATTGTAATTCTATTCAAGACAAAACAAATATTGGGTCGAATCATTTTGGAGCAAATCCAACTGAGAGGAACAGGAACTTGAGTACAAAACTATCTGTCACTAATCCTCAACTTACAAAGGAGGAAAGTGAGGAAGCAAAAGAACAAAGAAGAAGGCAATCAAATAATAAATCAGCTAAGAGATCAAGGATGAAGATGAAGATGGAACGTGAAAGGTTAAATGCTTCCATTAAAAATCTAGGTGTCGAAAATGCTGCGCTCAGAAAAGAGCTTCATGACCTTCTTCATGAGTATGATAAGATCGTAGAAAATAACGATTCCATGCTGGATGAACTCAATGAAACGTTTGGTAAAGAAAAAGTAATGGAAGTTTTGAGTATGCAGTATGCTGACTCGGGCCAATGCTGA 1164 0.3849 MVLPFHDECVCIFKILQVGQSSLLASPNTLQRTSAENNMRFKNHSYKKISQPTSNVTPKAKENERRPSIQGINLKGSTKRYVCSAGEYLHYIFPTVSKFVHGVTSESKQRTAVVNDNKNDGGSTKVDIHLRNRQDIRSAKQQQSRMMPGTDNFEANPSDPNQNLHIDLSASSANPVLEEISVHWPVKHVSRTSELIINKNSTILLANVFTIIVHNAYKHGSFQLVDIFSAKHEKSSMTVRNGGAANNVTSIENCNSIQDKTNIGSNHFGANPTERNRNLSTKLSVTNPQLTKEESEEAKEQRRRQSNNKSAKRSRMKMKMERERLNASIKNLGVENAALRKELHDLLHEYDKIVENNDSMLDELNETFGKEKVMEVLSMQYADSGQC 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02316 387 Gene3D - 287 356 - -
Vimu5g02316 387 MobiDBLite consensus disorder prediction 292 307 - -
Vimu5g02316 387 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 297 360 IPR004827 GO:0003700|GO:0006355
Vimu5g02316 387 Coils Coil 322 356 - -
Vimu5g02316 387 PANTHER G-BOX-BINDING FACTOR 3-RELATED 142 370 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vimu5g02316 387 MobiDBLite consensus disorder prediction 287 318 - -
Vimu5g02316 387 CDD bZIP_plant_GBF1 301 351 IPR045314 GO:0003700|GO:0006355
Vimu5g02316 387 Pfam bZIP transcription factor 296 353 IPR004827 GO:0003700|GO:0006355
Vimu5g02316 387 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 302 317 IPR004827 GO:0003700|GO:0006355
Vimu5g02316 387 SMART brlzneu 295 359 IPR004827 GO:0003700|GO:0006355
Vimu5g02316 387 MobiDBLite consensus disorder prediction 48 67 - -
Vimu5g02316 387 SUPERFAMILY Leucine zipper domain 298 351 IPR046347 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02316 276 373 bZIP Transcription Factor Family AT4G36730 37.755 2.21e-12 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g02316 bZIP_1 1.4e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02316 K09060 - var:108339461 459.529