Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02303 ATGGAGATGGAAGATTACGCGAGCAGTGATGAGGATTACCATTACGACTCCGATCAAGATGACTCTGTCGAGGCTTACGAAAACGACGAGGATTACGCGTTACTCTCTTCCAAGGGTCCCACAACCAAGATGGTTTTGTTGAAGGTTGGGGCTTTTAGAGCTGCTTTGAATTTTGTTGCCTGGTTGGACTGCGGTTTCTTTATGACTGACATCTCCGGTTACTGTGGGTTGTCTGATGAACTCCTTTGGCATTTGCAGGTGATTACAAAGGAATCACTTTTGGTCGCACAGAAGGAGGATTTGCGCAGAGTAATGGAGATGCTATCGGTAAGAGAGCAACACGCTCGTACACTGCTAATATATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTATATGTAGACAAGGGGAAAGCATTTCTCTTTGGTGAGGCTGGTGTTACTGTGGATGAACATCCCGACTCTGACTCATCCGTTCCTTCTACAGTAATGTGCTACATCTGCATGGAGGATGTTGCTAGGGTCGAAACAACAAGAATGGATTGTGGTCATTGCTTTTGCAATTCCTGTTGGATTGAGCATTTTATTGTTAAAATAAATGAGGGTCAAAGTAAACGTATTAGATGCATGCAACACAAGTGCAATTCCATATGTGATGAAGCTGTGGTTAGAACTCTACTCAGTAGAAAGCACCTTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCTTACATTGAAGACAATAAAAGAGTTAAATGGTGTCCCAGTACACCTCATTGTGGGAATGCAATACGGGTTGAGGATGATGAATTGTGTGAGTTTTGTTTTAGGTGCTTGTCAGAAGCACACTCACCTTGTTCATGTCTGATGTGGGAGCTTTGGGCTAAGAAGTGTCGAGATGAGTCAGAAACTGTTAATTGGATAACCGTTCATACAAAACCATGCCCAAAGTGTCACAAACCAGTGGAGAAGAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGTTGTGCGGTGGAGCTACTGGCCGAGAGCATACTTGGTCAAGTATAGCTGGTCACAGCTGTGGTCGCTACAAAGAGCAAGAAAAAACGGCAGAACGTGCAAAGAGGGATCTGTATCGGTATATGCATTATCATAACCGATATAAAGCTCACACAGACTCCTTTAAGATTGAAAGCAAACTGAAAGAAACTATACAAGGGAAGATTGCCATTTCAGAAGAAAAAGATTCTACACTCAGAGATTATAGCTGGGTAAATAATGGTCTCTCCAGACTTTTCAGATCTAGGAGAGTCCTATCCTATTCATATGCTTTTGCATTTTATATGTTTGGAGATGAGCTTTTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAACTTATTTGAGGATCAACAGCAGCAGCTCGAGGCAAATGTTGAAAAGCTCTCTAAAATTTTGGAGGAGCCTTTTGAAACCTTTTCAGATGATAAGGTTGTGGAGATAAGAATGCAGATTCTCAACCTCTCAACAATTATTGATAAGCTTTGTCAAAAAATGTATGAGTGCATCGAGAATGATTTATTGGGTTCTCTCCATCTTGGCATTCATAGTATCGCTCCATACAAGTCAAAGGGCATCGAGAGGGCTTCAGAACTTTCAGTTTGTTGGAACAACAAAGTAAATACTGAAATGTTACTGAGTGAAAAGGATTATTGTATATATGCTGCAAGCGTAGGTGTAACAGCAGAACTTGATCGGCCTTCTGGATCAGGGAGTTCAGATGATAATGGATGCTCTTCTCGTAAACGTGCTAGAAAAGATGGTGTTGGAGGTGGTTTTTTTGATCTAAACTTGCCAGCAGAGTTTGTAGACAGAAATTGA 1896 0.413 MEMEDYASSDEDYHYDSDQDDSVEAYENDEDYALLSSKGPTTKMVLLKVGAFRAALNFVAWLDCGFFMTDISGYCGLSDELLWHLQVITKESLLVAQKEDLRRVMEMLSVREQHARTLLIYHRWDVEKLFAVYVDKGKAFLFGEAGVTVDEHPDSDSSVPSTVMCYICMEDVARVETTRMDCGHCFCNSCWIEHFIVKINEGQSKRIRCMQHKCNSICDEAVVRTLLSRKHLDMAEKYERFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDELCEFCFRCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKIESKLKETIQGKIAISEEKDSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDELFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILEEPFETFSDDKVVEIRMQILNLSTIIDKLCQKMYECIENDLLGSLHLGIHSIAPYKSKGIERASELSVCWNNKVNTEMLLSEKDYCIYAASVGVTAELDRPSGSGSSDDNGCSSRKRARKDGVGGGFFDLNLPAEFVDRN 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02303 631 CDD RING-HC_RBR_TRIAD1 163 216 - -
Vimu5g02303 631 MobiDBLite consensus disorder prediction 1 20 - -
Vimu5g02303 631 FunFam RBR-type E3 ubiquitin transferase 160 250 - -
Vimu5g02303 631 SUPERFAMILY RING/U-box 161 248 - -
Vimu5g02303 631 SUPERFAMILY RING/U-box 298 355 - -
Vimu5g02303 631 ProSiteProfiles TRIAD supradomain profile. 161 367 IPR044066 -
Vimu5g02303 631 CDD Rcat_RBR_ARI1-like 311 364 - -
Vimu5g02303 631 CDD BRcat_RBR_ANKIB1 243 299 - -
Vimu5g02303 631 Pfam IBR domain, a half RING-finger domain 236 290 IPR002867 GO:0008270
Vimu5g02303 631 SUPERFAMILY RING/U-box 236 296 - -
Vimu5g02303 631 Gene3D - 286 533 - -
Vimu5g02303 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 251 IPR013083 -
Vimu5g02303 631 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 92 431 IPR031127 GO:0004842|GO:0016567
Vimu5g02303 631 Pfam Ariadne domain 367 631 IPR045840 -
Vimu5g02303 631 ProSiteProfiles Zinc finger RING-type profile. 165 213 IPR001841 -
Vimu5g02303 631 SMART ibrneu5 236 290 IPR002867 GO:0008270
Vimu5g02303 631 SMART ibrneu5 298 363 IPR002867 GO:0008270
Vimu5g02303 631 MobiDBLite consensus disorder prediction 590 614 - -
Vimu5g02303 631 FunFam RBR-type E3 ubiquitin transferase 286 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02303 Vimu-Chr5 33974705 33977889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02303 105 564 ARIADNE family AT2G16090 71.186 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02303 K11968 - gmx:100783343 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02303 5 33974705 33977889 Vimu5g02303 5 33974705 33977889 ECH