Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02278 ATGTGGTTCAAAACACTAGGGCATGTGAATAGTTGCTTCTGCAATAACATCTTCTGCATAATCAAGCAGATCCAACGTTTCTTTGACAGCAATAGCACGATGACTGGTGGAGAGAGGTACCCAGACTTCTTCAAAGTCTTCCTTCAAGATCAGCACTCAGAAAGAATGCTTATTCCCAATGCTTTTGTGAAGTTGGAACGGTTACAGGGAAGGATCCCTGAGGATGTCCTCCTCAGGAATAGTAGTGAGAGAGTGTGGCATGTTAAAACACGGTTTTTTGGGGACAGATTATATTTCGATGAAGGGTGGAAGATTTTCCGTGAAGAAAACTGCTTAAGAAATGTAGATTTTCTGATATTTAGATATGACGGGGTTAATGAGTTCAGGGTCAAAATCCTTGAAAAATCAACACAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAGGAGGGGAATGAAGAAGAGAAAGCAGCACCACAAGAAGTTGAAGAGACAGTGATAACACAGGAGGAACAAGCTGAGGACCGTGACATAGAGGACGAGGAAGACAGCCAAGATCAGGACTACGATGATGACGACAATGATGATAGTGATTTTGATGAGAACATAGAGATGGAAGAACAGAGTGAAGAAGAAATCTTCGTTGGTCCTGTTGGATACACCAGTCAAAGTTATCGAAAAACTTACAGAAGGGACACTGCATCAAGTTCCTACCCCCAGACTGATGACCCTTTCAAAGAAGAGGAATTTGACCCAGAAACGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAACGAATTGCATATTCCAGGAATCGCCATTCAAGATTTTTCTCTCAGTTTTCCTGAAAAGATTACCCTGAAATGTTGTCAACACTGCCAGCGAAAGGATATTCAAAGAAACAAATTGCAAGACTATCATCTCAACTTGGTACAAGAGACACCCATCAGAAAAAGATATTTAGAAGTGACGGGAAAAGTGTGTAGGTGGCAGGATGATAGAATATGTATCAAGGGTTGGGCAAACTTTAGCAGAAGGAACAAGATAAAAATTAATGATGTGTGCATCTGTGAAGTTATATCAGACGAAGACCAAGTAGTAAGAACATTTCTGGTGCACGTTATTGGTACTAGGAGGGAATAA 1170 0.4094 MWFKTLGHVNSCFCNNIFCIIKQIQRFFDSNSTMTGGERYPDFFKVFLQDQHSERMLIPNAFVKLERLQGRIPEDVLLRNSSERVWHVKTRFFGDRLYFDEGWKIFREENCLRNVDFLIFRYDGVNEFRVKILEKSTQCEKTLVKMEEEEEGNEEEKAAPQEVEETVITQEEQAEDRDIEDEEDSQDQDYDDDDNDDSDFDENIEMEEQSEEEIFVGPVGYTSQSYRKTYRRDTASSSYPQTDDPFKEEEFDPETCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNKLQDYHLNLVQETPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKINDVCICEVISDEDQVVRTFLVHVIGTRRE 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02278 389 Gene3D - 246 386 IPR015300 -
Vimu5g02278 389 ProSiteProfiles B3 DNA-binding domain profile. 41 136 IPR003340 GO:0003677
Vimu5g02278 389 PANTHER B3 DOMAIN-CONTAINING 39 372 - -
Vimu5g02278 389 MobiDBLite consensus disorder prediction 168 200 - -
Vimu5g02278 389 MobiDBLite consensus disorder prediction 145 200 - -
Vimu5g02278 389 Pfam B3 DNA binding domain 43 135 IPR003340 GO:0003677
Vimu5g02278 389 CDD B3_DNA 41 133 IPR003340 GO:0003677
Vimu5g02278 389 SMART B3_2 43 136 IPR003340 GO:0003677
Vimu5g02278 389 SUPERFAMILY DNA-binding pseudobarrel domain 334 385 IPR015300 -
Vimu5g02278 389 Gene3D - 34 139 IPR015300 -
Vimu5g02278 389 SUPERFAMILY DNA-binding pseudobarrel domain 39 136 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02278 Vimu-Chr5 33838089 33841288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02278 34 383 B3 DNA Binding Superfamily AT3G06160 25.419 9.03e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu5g02278 B3 8.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02278 - - var:108340234 668.692