Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02277 TTTAGAACATCATTGAGATCTTGTCTTACAAAAAATTACCAATATTTGGAATCAAACTTGATTTATGAATTGCAGAGGCTTCCAGATGATTTTATGAGGAAATATGGGGGTGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGGTTGAAAAAGGCAGACAACAAGTATTGGTTCCGTGACGGTTGGCAAGAGTTTATTCAGCACTATTCCATTGGCGTAGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCAGGTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATACGATGCAGTAATGAAGGGCCTCACTTTGCAAATCTTCTTAAATTTTTTGAAGAAATGGATGATGAAGATTCCATTGAAATCTTGGATTCATCACCTTCCCATCTTGCTCCAAGTTCATTGCAAAATAGAGTTCTTGCTTGTTCAGTAGATAAAATGTCGCCTGCAAAGAGTTATACACCTCCAGCATTACAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGGGAGGGTGGTGATGCGCATTGTTCCAAAAGTGCCAATTCACTGGATAATCGATTCACCAGAGACATAGGAGTTCAATTTAACGCAGTCGAGTTTAAAAGATCTACTGAAGAATTGAAACTACGAGCTTCCATGGAGGAAAGGTTGAAAAAAACTGCAAGAAAGAAGCGGAAATCAGATGGACAGGAAGCCTCTGCTGAGCAAGAAGAGGAAGTTGAAATGCGCTTCAGATTTTATGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGAGAGAGGGCCATCAGTGCAGCGAAAGCATTTGAACCACCTAATCCTTTCTGTAGGGTTGTCCTAAGGCCCTCCTACCTATACAGGGGATGCATAATGTATCTGCCATCCTGTTTTGCAGAAAAACATTTGAATGGAGTTTCTGGGTTTATTAAACTTCAGATTTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGTAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAACAATTTAGGGGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAATGAAAGAAGTAGTGCTGCAAGTTACCATATTTCGCATTACTGAGGAAGTGGGAATGTTGAAGCCTCCTCCTTCGCAGCAGAACCAAAACATGAGCTCAGCTAAACTGCTGAACAATCCCTTGCAGCAACACCTTAGTTCAACTCAAATGGTTAGAAATTAG 1308 0.4052 FRTSLRSCLTKNYQYLESNLIYELQRLPDDFMRKYGGELSPIVTLSVPDGSVWRVGLKKADNKYWFRDGWQEFIQHYSIGVGYLLVFRYEGKSGFNVHVFNLATSEINYQSAIRCSNEGPHFANLLKFFEEMDDEDSIEILDSSPSHLAPSSLQNRVLACSVDKMSPAKSYTPPALQNLFNGSKLNSINWGEGGDAHCSKSANSLDNRFTRDIGVQFNAVEFKRSTEELKLRASMEERLKKTARKKRKSDGQEASAEQEEEVEMRFRFYESASARKRTVTAEERERAISAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRVGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVTIFRITEEVGMLKPPPSQQNQNMSSAKLLNNPLQQHLSSTQMVRN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02277 435 Gene3D - 278 398 IPR015300 -
Vimu5g02277 435 PANTHER B3 DOMAIN-CONTAINING 18 384 - -
Vimu5g02277 435 ProSiteProfiles B3 DNA-binding domain profile. 301 396 IPR003340 GO:0003677
Vimu5g02277 435 CDD B3_DNA 299 394 IPR003340 GO:0003677
Vimu5g02277 435 CDD B3_DNA 26 101 IPR003340 GO:0003677
Vimu5g02277 435 MobiDBLite consensus disorder prediction 240 259 - -
Vimu5g02277 435 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Vimu5g02277 435 SMART B3_2 16 103 IPR003340 GO:0003677
Vimu5g02277 435 SMART B3_2 301 396 IPR003340 GO:0003677
Vimu5g02277 435 SUPERFAMILY DNA-binding pseudobarrel domain 17 101 IPR015300 -
Vimu5g02277 435 SUPERFAMILY DNA-binding pseudobarrel domain 294 395 IPR015300 -
Vimu5g02277 435 Pfam B3 DNA binding domain 304 394 IPR003340 GO:0003677
Vimu5g02277 435 Pfam B3 DNA binding domain 26 100 IPR003340 GO:0003677
Vimu5g02277 435 Gene3D - 8 103 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02277 Vimu-Chr5 33834714 33836211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02277 26 397 B3 DNA Binding Superfamily AT3G18990 51.604 6.88e-124 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu5g02277 B3 1.7e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02277 - - var:108340232 785.023