Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02276 ATGTGGCAGATGGATTATTATCGGGGCAATCCAGTCTTCTTTGTTATCATCAACAACTCCAAATTACAGAATGTGGTATACTGGTTTGAAGCCTATGTTATTTGTCATAACTTGCAGAAAGTGCCGGAGGGGTTTCTGAAGCATTTGAATGAAGACTTTCAGAATGCAGTTCTTATTGGTCCTTCTGGTGATAATTGGCAAGTGACTATTTTGAAGAAAGGAAATAACATTTATATGCACAATGGTTGGCCACAGTTTCTGACCGACAACTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAAATTTTTGGTAAGAATGGATTGGAGAGGTTATGTTTCAAGCAAACAAGACAAGATCAAGTTCTGATCCCAAGTTTGGTGAGGACAAAGAAGAACACACACAGAAGAACTTCTTCCAGTTCATTCCTCCACCAAGCCAACAACAAATTCTCATTTTCAAAGCTCAAGAGTTCAGTTAAAATTGAAAGTTCAGAAGCATGCTACTTGGCAGATTCTTTTACCTCTCGCAACCCTCACTGGAAGCACCTCATGACTAAATGCAATGTAGAAGATCACTGCACACTGCCAATTGCTACTGAGTTTGCCAGGAAGCATATTCCTGAAACAGTGAAACAGATAGTTCTTTGGAACACAGAAGGAAAATTTTGGGAAGTGGTAGTGACTTGGTTTGGATGTCAAAATAAGAGATATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTTATGAGGGCCTTTGGTTTTTCTGCCTTCCCTGCTTCACAGCTAAACTCTGCAACTGGATTTACAATAGTTTTGGATATATTGATGGCTGCTGTTGTGAAAAAGTACCCTGGCTTCTTCACAATCTTCCTTCCACTGCAACACTCTCACACTATGCATATCGTAATCTGGTTTCAAGACTATCGCAGTGTTTTCTGTGATAATCTGCAGAAAGTTCCAAAGGAGTTTTTGAAGAATTTGCATGAAGACTTGTCGAGTAATGCAGTTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTGAGTGTTCTAAAGAAAGGAAGCCAAGTGTATATACAAAATGGTTGGCCACAGTTTGTGACAGATAACTCAATTGTGCTTCATGATGTACTGATTTTTACATATCATGGAGAGAACTGTTTCCATGTTCAAATTTTTGATAAGAATGGAGTGGAAAGGTTATGCCTCAAAGAAAAAACACAAGAACAAGCTGCCATACCAGAGAAGACTACTAATGTATCCAAGTGTCGTAAAAAAGGTTTGGAAACAGATATGCCTTGCGGAAACAAAGGCTTCATTTTTACTGGTTGTGAGACAATGCAAACAAGACAAAAACAAACTGCCACCCCAAGTTTGGCAAGGACAAAGAAGAATAAAGAAAGACAATTTTCTCCTGGAAAGTCTCATCAAGAAGACTTGTCTCCTCCGAAGGACTTCCCTACTCCTCAACATTCAGTTGAAATTGAAAGTTCGGAAGCATTGAAATTGGCCGAGTCCTTTACCTCTAGCAAACCTTACTGGAAGAACCTCATGACAAAATGTCATGTAAAAGGTCGTTGCATATTGCCTATTGCTACTAAGTTTGCCAGAAGGTATATTCCTGAAGAAGTGAAACAGATGCATATTGGAAATTCCGAAGGAACACTTTGGAAAGTTCATGTGAGTTGGTCTAGAGGTTATGCTCACTTCGGTACAGGATGGGCAAATTTCGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAAACCTTCATTTCAGGGTTCACATATTCAGAACCAGATGTGCACCAAGTTAA 1881 0.3955 MWQMDYYRGNPVFFVIINNSKLQNVVYWFEAYVICHNLQKVPEGFLKHLNEDFQNAVLIGPSGDNWQVTILKKGNNIYMHNGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLCFKQTRQDQVLIPSLVRTKKNTHRRTSSSSFLHQANNKFSFSKLKSSVKIESSEACYLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPETVKQIVLWNTEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRAFGFSAFPASQLNSATGFTIVLDILMAAVVKKYPGFFTIFLPLQHSHTMHIVIWFQDYRSVFCDNLQKVPKEFLKNLHEDLSSNAVLSSSSSGDKWQVSVLKKGSQVYIQNGWPQFVTDNSIVLHDVLIFTYHGENCFHVQIFDKNGVERLCLKEKTQEQAAIPEKTTNVSKCRKKGLETDMPCGNKGFIFTGCETMQTRQKQTATPSLARTKKNKERQFSPGKSHQEDLSPPKDFPTPQHSVEIESSEALKLAESFTSSKPYWKNLMTKCHVKGRCILPIATKFARRYIPEEVKQMHIGNSEGTLWKVHVSWSRGYAHFGTGWANFVRDNKLMRGDTCIFELEENLHFRVHIFRTRCAPS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02276 626 CDD B3_DNA 533 620 IPR003340 GO:0003677
Vimu5g02276 626 SUPERFAMILY DNA-binding pseudobarrel domain 10 117 IPR015300 -
Vimu5g02276 626 ProSiteProfiles B3 DNA-binding domain profile. 529 622 IPR003340 GO:0003677
Vimu5g02276 626 SMART B3_2 301 411 IPR003340 GO:0003677
Vimu5g02276 626 SMART B3_2 533 622 IPR003340 GO:0003677
Vimu5g02276 626 SMART B3_2 190 293 IPR003340 GO:0003677
Vimu5g02276 626 SMART B3_2 29 116 IPR003340 GO:0003677
Vimu5g02276 626 CDD B3_DNA 11 113 IPR003340 GO:0003677
Vimu5g02276 626 SUPERFAMILY DNA-binding pseudobarrel domain 324 412 IPR015300 -
Vimu5g02276 626 SUPERFAMILY DNA-binding pseudobarrel domain 185 263 IPR015300 -
Vimu5g02276 626 SUPERFAMILY DNA-binding pseudobarrel domain 522 621 IPR015300 -
Vimu5g02276 626 Gene3D - 169 266 IPR015300 -
Vimu5g02276 626 Gene3D - 508 622 IPR015300 -
Vimu5g02276 626 ProSiteProfiles B3 DNA-binding domain profile. 317 411 IPR003340 GO:0003677
Vimu5g02276 626 MobiDBLite consensus disorder prediction 466 505 - -
Vimu5g02276 626 Gene3D - 7 117 IPR015300 -
Vimu5g02276 626 Gene3D - 293 413 IPR015300 -
Vimu5g02276 626 ProSiteProfiles B3 DNA-binding domain profile. 24 116 IPR003340 GO:0003677
Vimu5g02276 626 CDD B3_DNA 334 409 IPR003340 GO:0003677
Vimu5g02276 626 ProSiteProfiles B3 DNA-binding domain profile. 190 289 IPR003340 GO:0003677
Vimu5g02276 626 Pfam B3 DNA binding domain 532 621 IPR003340 GO:0003677
Vimu5g02276 626 Pfam B3 DNA binding domain 33 115 IPR003340 GO:0003677
Vimu5g02276 626 Pfam B3 DNA binding domain 331 411 IPR003340 GO:0003677
Vimu5g02276 626 Pfam B3 DNA binding domain 193 263 IPR003340 GO:0003677
Vimu5g02276 626 MobiDBLite consensus disorder prediction 476 496 - -
Vimu5g02276 626 CDD B3_DNA 194 263 IPR003340 GO:0003677
Vimu5g02276 626 PANTHER B3 DOMAIN-CONTAINING 294 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02276 Vimu-Chr5 33825635 33830747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02276 323 621 B3 DNA Binding Superfamily AT3G18990 24.484 2.30e-22 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vimu5g02276 B3 3.1e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02276 - - vra:106778427 545.043