Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02262 ATGGAAGATCATTTTTCCCCAAAGGGGAAGGAAACTGGCTATTGCACATCTCCTTGTACCCAGTTGGAGGAATCAACATCGGTTGATGGTGGGATGAAAAAATCTGCTTCAGAGGACATGTTTAGCAACTTCTCTGAGCTCATGAACTTTGATACCTATGCTGGTTGGAGCAATAGTTCATCTATGACTTATCAGAGTTTGGCAAATGTGTTTTCATCATTTTCCTCAGCATCATATCCACCATCCGATGGATTGAATCTGGTGGAACATGGCAATGGTCCATGCTTTATGACAGAAGTCAGTGAAATTCACAATGGTATAAAAAGTTCTCCTAGTTGTGAAGAAAGAGGTATATTTCAGCAAATGGACATCCAACTTGGTTTCTTAGATGAAGCAAATGATTCAAATAGCTTTGATTCAAAACAAAATCGTAATGGTTTATATCAGCAACTTAATACCTCAGACATGTGCAATTACATGATCTCAAGGTCATCAGGGAGGCCACTTGATGATAGAATGTTGAGGGCTTTGTCCTTTTTTATGGAATCAGTTGATGAGGGAATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTATGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGAGAGGTGTCAAGGGCATTCACATTTTCTGCAGAAGGAAAGAAAGGATCATGTCCGGGGCTTCCTGCACGAGTGTTTACATCACATGTTCCTGAATGGACTTCCAATGTTGGCTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCATTGAATCATGATATTCGTGGATCTATTGCTCTTCCTGTTTCTGATATGCATTCTCATGAGCCATGTGCTGTATTGGAACTGGTCACTACAAAGGAAAAACCTAATTTTGACAGAGAATTAGAAATTGTTACTCATGCACTTCAGATATTTCCATATTACGTTATCATCGAAGGTGCTAATGATAAATATCCTTATGATGACATTATGCAGCTTGTAAATTTAAAGACTACTATGCCTCCACGACTTCTTCCCCAGGTGTTTTTGAGTAAAAAATTCTTGTTGTCTTTGCCACTACATCTGCCGTTGTCGGTGGTGGCACCATCTACTACTACCAGCGGCGACCACCGTGCCATCAGACGATTTCATCGGAGCTCTTATGCGCTCTTAGCGCCTTTTGAAATTGCGGATATGCTTTCTTTTCCGTTGTGCGTGTCCGTCTCATCTCCTCTTAGACAGCAATTCAGAGTGTCGAAGTCACTCTTTTTTCTTTTTCAGTGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTACGTGCCGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTGCTACAGTGAGGGAATAGGAGATGAAGCTGAGAGAATACGAATCAAAGAAGGTCATACAAGTTCTGACGAAAAGTGTGTGCTATGTATTGAGGAATCAGCTTGCTATATAAATGATGGAGCAATAGGAGGATTTGTCCATGCTTGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCAGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTACACTGATGTGAAGACATATGATATTAGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTATACCAATGATGATGATTACATATTAGAGTTCTTTCTGCCAGTGAACATGACAGGGAGTTCAGAACAACAACTTTTACTGGATAATCTCTCAGGTACCATGAGGAGAATTTGTAGGAGTTTGAGAACAGTTTCAGATGCTGAAATAACAGGAATAGAAGGATCCGTAGCTGGGTTTCCAAAGGAAAAGCTCACATATTTTTTTCCCATGTCCAGAAGAAACTCTCAGATAGCATTTATAAATGATGATCATGATTCGAATCAGAAGATGGCCTTGAAGACATCTAGCAATGGAATTGAAGCTGTTCATGGCCAGGTAATGAATGGACCAAGAAAACAGATTGAGAAAAAGAGAAGTACAGTGGAGAAGAATGTTAGTTTGAGTGTTCTACAACAGTACTTCTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCTCGGAAGATCAATAAAGTGAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGTTTATAGCTGGAGGATCACTGATGCAAGAAATTGACACACATAAATATATTCTATTTCCTGAGAGAAGTGCTGTGAAAGACCCTAAGCATGCAACACAAAAACCAGTCTCAGTAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATGATGATGATGATGATGGTGTTTGTTTGGTGGAAAACAAGATTGTAGACTCAAGAAGTGCACTTTTATCTAATACCAGTGTGGGAGGATTTAAAAAAGACAATGCTTCTTCTGATGATTGTTGTGAAGATTCAAAATCAGTGGCCATGAATGATGGATCAAGCCAAAAGGCCAAGAATCAGGATTGTCCTGAACAAACTTGTTCAATATCCTTGGTTACAGATGAGGCTGAAGTTGGAGTGGATGGGGGAGAAGGAATTGAAGAACATAACAACCTTGTAAATTCTTCAAGCACCACAAACTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCATGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAACCAACTTCTGTCGATAGTGAGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTCCAGCTATATGAAGAAGTTGCAACAAGGTTCAAACTCCAAAACGGGTTATTCAAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGAGAATGACTCAGATTTGCAAGAGTGTGTAGAAATTTTGCATGACATTGGCACACGTTGTGTGAAGTTTCTTGTTCGTGATTCGTGGCAGCAACAATTGCTTCTTGTCAGACAGTTCATAGTGTCTGAAATCATCCATGGCTTCATTGTGGTGTATGTTACTTCTGATAATCCAAATATGAATATAAGTTGCAGGATGAGAAGAGATAGGAAAACCAGTGAGTCAACCTTTTATAGAATTGAGATTGGATTCGAAAGGGAAGAAAAACGAAAAACACGTGTGAAGTATAAAGGTTGGAACAACAGAGAAGAAGCTTCGTGGGCTCCACTTAAACCGTGGGAGAAAGTAGCATCCTCATCTGGGACTGCACCTTTTAGACCCCCATCAGCAGGTAGAACGAGTGATGTAGTTGAGTCTTCAGGAACTGCAAAACCTGGGGAAATAGTTTCAGCTTCCAATAACTCTGCAACTGTCAATAGGAATGCTCTTGGAAGACCCCTTCCCACAAGGCCTTGGGAGCAGAATTATGGAACTACCAGCTATGGAGGTTATGGTTCTACAATGAACTACAATTCTGGATATGGATCTTATGGTGGAGTGGGAGGGTTTAGGGGTGGAGGAATGTATGGCAACAGTATGTACGGGGGAGGATATGGGGGGCTTTATGGGTCCTCTGGGATGTATGGAGGGGGAATGTATAATGGTGGCTTTGGTGGTCCTATGGGTGGTTATGGCCTGGGTGGTGGTCCTTATGGAGCTGAAGATCCCAATAATCCATATGGTGCTCCTTCATCGCCTCCAGGATTTTGGATTTCTTTTATACGTGTGCTTTTTGACCGGTCTGGTGTATTATATGGAGAGCTAGCTAGATTTGTGTTACGGTTGCTTGGAATCAAAGCTAAACCCAAGAAGATTAACCCTCCAGGTCCTGATGGACTTCCACTGCCTGGGCCACACACTTCCTCTGTAAATCAGAACTATATTGAGGGACCAAAGGCTGCTCCAAGTGGTTCCTGGGACAATGCATGGGAATATGATACCAATAAGTGA 4119 0.4134 MEDHFSPKGKETGYCTSPCTQLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMTYQSLANVFSSFSSASYPPSDGLNLVEHGNGPCFMTEVSEIHNGIKSSPSCEERGIFQQMDIQLGFLDEANDSNSFDSKQNRNGLYQQLNTSDMCNYMISRSSGRPLDDRMLRALSFFMESVDEGMLAQVWVPIKHGDEFILCTSEQPYLLDPKLAGYREVSRAFTFSAEGKKGSCPGLPARVFTSHVPEWTSNVGYYNKTEYLRLDHALNHDIRGSIALPVSDMHSHEPCAVLELVTTKEKPNFDRELEIVTHALQIFPYYVIIEGANDKYPYDDIMQLVNLKTTMPPRLLPQVFLSKKFLLSLPLHLPLSVVAPSTTTSGDHRAIRRFHRSSYALLAPFEIADMLSFPLCVSVSSPLRQQFRVSKSLFFLFQCLSSNKRAALTEIVDVLRAVCHAHRLPLALTWIPCCYSEGIGDEAERIRIKEGHTSSDEKCVLCIEESACYINDGAIGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDISEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVNMTGSSEQQLLLDNLSGTMRRICRSLRTVSDAEITGIEGSVAGFPKEKLTYFFPMSRRNSQIAFINDDHDSNQKMALKTSSNGIEAVHGQVMNGPRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGFIAGGSLMQEIDTHKYILFPERSAVKDPKHATQKPVSVVSAPGSTSENSTIKLDDDDDDGVCLVENKIVDSRSALLSNTSVGGFKKDNASSDDCCEDSKSVAMNDGSSQKAKNQDCPEQTCSISLVTDEAEVGVDGGEGIEEHNNLVNSSSTTNSSNGSGSMMHGSSSCSQSFENQKHSKVKPTSVDSESKMIVKASYRGDTIRFKFDPSAGCFQLYEEVATRFKLQNGLFKLKYLDDEEEWVMLENDSDLQECVEILHDIGTRCVKFLVRDSWQQQLLLVRQFIVSEIIHGFIVVYVTSDNPNMNISCRMRRDRKTSESTFYRIEIGFEREEKRKTRVKYKGWNNREEASWAPLKPWEKVASSSGTAPFRPPSAGRTSDVVESSGTAKPGEIVSASNNSATVNRNALGRPLPTRPWEQNYGTTSYGGYGSTMNYNSGYGSYGGVGGFRGGGMYGNSMYGGGYGGLYGSSGMYGGGMYNGGFGGPMGGYGLGGGPYGAEDPNNPYGAPSSPPGFWISFIRVLFDRSGVLYGELARFVLRLLGIKAKPKKINPPGPDGLPLPGPHTSSVNQNYIEGPKAAPSGSWDNAWEYDTNK 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02262 1372 Pfam RWP-RK domain 701 749 IPR003035 -
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 806 830 - -
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 921 957 - -
Vimu5g02262 1372 Gene3D - 965 1048 - -
Vimu5g02262 1372 PANTHER PROTEIN NLP8 137 1051 IPR045012 GO:0003700
Vimu5g02262 1372 ProSiteProfiles RWP-RK domain profile. 681 769 IPR003035 -
Vimu5g02262 1372 SMART PB1_new 969 1051 IPR000270 GO:0005515
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 873 895 - -
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 1141 1199 - -
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 1329 1372 - -
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 858 895 - -
Vimu5g02262 1372 Pfam PB1 domain 972 1050 IPR000270 GO:0005515
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 1145 1185 - -
Vimu5g02262 1372 ProSiteProfiles PB1 domain profile. 969 1051 IPR000270 GO:0005515
Vimu5g02262 1372 CDD PB1_NLP 970 1050 IPR034891 -
Vimu5g02262 1372 SUPERFAMILY CAD & PB1 domains 964 1054 - -
Vimu5g02262 1372 MobiDBLite consensus disorder prediction 914 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02262 Vimu-Chr5 33761665 33771269 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02262 1 319 NLP Transcription Factor Family AT2G43500 44.444 4.76e-66 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu5g02262 PB1 2.7e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02262 - - gmx:100793770 1028.85