Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02252 ATGCCACTTCCAGCAAAACCAATGAGGGACTCCGACGAGTTGGCGAGCCCTTCGAACAACCTGTGGGTTGGGAATCTGGCGCCGGACGTCACTGACGCCGATCTCATGGAACTTTTCGCCAAATACGGTGCGCTCGACAGCGTAACTACTTATTCCGCTCGCAGTTACGCCTTCATCTACTTCAAGCGCGTCGAAGACGCCAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCTAAGGCATGCAAACAGCTTTGGGTAGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTCGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTACAGAGACCGAAATACTGCATGTGTTGAATTTTTCAATTTGGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAGCGAATAGGTGGGGAGCATATTCGTGTTGACTTCCTTCGATCCCAGACTATAAAAAGGGATCAATTGTTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGACAGAAAAGACCGCTGCATTCACAGGCTCCAATGGGGAGGAAAGGCGATACTCAACCAAGTAATGTTTTGTGTATTGGTTATCCTCCTGCTGTTCAGATTGATGAACAAATGCTGCATAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAATTATTCTACCGTAGAGTTTAGAAATGTTGATGAAGCTCGACGTGCTAAAGAGGGCCTTCAAGGGCGACTTTTTAATGATCCTCGAATAACAATTACATATTCCAGCAATGACCTAGTACATGGCAGTGATTATCCTGGCTTTTTCGCTGGAAGTAATGGACCTAGGCCTGATGTATTGCTGAATGAGAATGCATTGCAACGGTTACAAATGGATGCATTTGGTCATAATCGTCCAATGGTGCCAAATAATTTTACTGGTCAATTACCACCTAGTGGTATTATTGGTCCAAATGTACGATTGCAACCTTTTGGTCCCCTTAGTCGTGTTGATTCTGTTATTTCTGGCCCCGAGTTTAATGAGATTAGTGCCCTCCACAAACTTCAGGATGGCAGCTCCAAAAGTAACATGGCTCCAAACTGGAAAAGGCCATCTCCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGTTGCTAGGCATCCTACAAGATCCACCACCGGTGCATGGGATGTACTTGACATAAACCATATTCCTAGAGATTCTAAACGTTCAAGGATTAATGGACCCTTACCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATAGATGATCGTGGGTTAGCCCTGGAGCAATCTTATGGGATAGATCCATCAATTGATGGAGGTGGTTCTGGTCCATTTGCAAACATTCAAGGAAAAAATCACCTTGGTCCAATGAGCTCAAGAATTACAGCTGGAGTACATGGTATGGTCCAACCTGATAATGATCATATTTGGCGTGGAATCATTGCAAAAGGTGGAACTCCTGTTTGTCGGGCTAGATGTGTACCAATTGGGAAGGGGATTGGGACCGAGCTTCCTGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCGAAATTTGTTGATAACACCACATTATTCTTGGTGCCTCCTTCTGATTTTCTCACTAGAGTTTTGAAAGTCAGTGGACCCGAGCGACTATATGGTGTGTTTCTGAAGTTTCCTCAAGTGCCAAGTAGTGCACCTATGCAGCAAGCATCGAACTTGCCTGTACCGACAAGTCAGTTTATGCAGCAAATTCCTCTTTCACAGACTGAATATGGTTTGATTCCTATCAAAGAGGAACAGGTTGTGTCAATGGATTATAACAGACAATTGCGTGAGGATTCTAAGCTTCCTAGTAAACCAGCCTACCTGTCTACAGGAGGGCCTCCTTCAGTTCATTCTGTACCTCCAGATTATGCTCCTAATAATGCTATTGCTGGGTCCCAAGCAGGAGTTGCATTAACTCCTGAGCTGATTGCAACTTTAGCATCTTTTCTCCCTTCAACTACACCATCATCTGGAATTGATGGTACCAAGCCTGGAGTAGGTTCCTCAACCATGAAGCCTCCTTTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAAGACAGTCAAAGTGCTGATCAAACCACTCATCCTCCTCAACAGATGAGGAGTATGTATAGCGTTCACAATGCTCACTATCAGCCGTATCCACCAGCATCTGCTCCAGCTGGCAATCCTGCTCAAGTGGTCTCTAGCAGTTCTCACATCCAAGACACTGCAGCCACCATGCATCAGCAAGGTGCTGTTTCATCTAGACACATGCCGAATTTCATGATGCCCACTCAAAGTGGACAGGTAGCTGCATCCCCTCATGGCAGTCAGCATTATCAACTTAAAGTCTCCCCAAGCAATCAGAAAGGCTTTGGAGTTGTGCAGGGAACGGATGCCCCTGTGTTATACAATTCTCAGGCTTTCCAGCAACCTAATAACAATCCACTGTCTTTCCAGCAACCTAATAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCTAATTCTTCACAACAGCAGACTGCCATGCCATATACAGTAGACCAAGTAAACTCGGGCACCCCAAATCAGCAACTTTCTGTTTCTGGAGGCAGTCAAGGCACACCAGAGGTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCCGCAGGAGGTCATGGACCAGGAATTCAACAATGA 3003 0.4449 MPLPAKPMRDSDELASPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTTYSARSYAFIYFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKACKQLWVGGISPAVTKEELEAEFRKIGKIEDFKFYRDRNTACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQTIKRDQLFDYGQFQGKSLGPSDAYSGQKRPLHSQAPMGRKGDTQPSNVLCIGYPPAVQIDEQMLHNAMILFGEIERIKSFPLRNYSTVEFRNVDEARRAKEGLQGRLFNDPRITITYSSNDLVHGSDYPGFFAGSNGPRPDVLLNENALQRLQMDAFGHNRPMVPNNFTGQLPPSGIIGPNVRLQPFGPLSRVDSVISGPEFNEISALHKLQDGSSKSNMAPNWKRPSPPAPGMLSSPAPVARHPTRSTTGAWDVLDINHIPRDSKRSRINGPLPVDEAPFPLRNIDDRGLALEQSYGIDPSIDGGGSGPFANIQGKNHLGPMSSRITAGVHGMVQPDNDHIWRGIIAKGGTPVCRARCVPIGKGIGTELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVFLKFPQVPSSAPMQQASNLPVPTSQFMQQIPLSQTEYGLIPIKEEQVVSMDYNRQLREDSKLPSKPAYLSTGGPPSVHSVPPDYAPNNAIAGSQAGVALTPELIATLASFLPSTTPSSGIDGTKPGVGSSTMKPPFPPVAPNDGSQSYLWKQDSQSADQTTHPPQQMRSMYSVHNAHYQPYPPASAPAGNPAQVVSSSSHIQDTAATMHQQGAVSSRHMPNFMMPTQSGQVAASPHGSQHYQLKVSPSNQKGFGVVQGTDAPVLYNSQAFQQPNNNPLSFQQPNNSIALTNQVSGANSSQQQTAMPYTVDQVNSGTPNQQLSVSGGSQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAAGGHGPGIQQ 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02252 1000 Gene3D - 206 298 IPR012677 -
Vimu5g02252 1000 PANTHER RNA RECOGNITION MOTIF-CONTAINING 14 89 - -
Vimu5g02252 1000 CDD RRM_SF 21 87 - -
Vimu5g02252 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 168 IPR000504 GO:0003723
Vimu5g02252 1000 Gene3D - 95 173 IPR012677 -
Vimu5g02252 1000 Gene3D - 5 94 IPR012677 -
Vimu5g02252 1000 MobiDBLite consensus disorder prediction 938 969 - -
Vimu5g02252 1000 FunFam Flowering time control protein FPA 11 93 - -
Vimu5g02252 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 289 IPR000504 GO:0003723
Vimu5g02252 1000 MobiDBLite consensus disorder prediction 187 212 - -
Vimu5g02252 1000 CDD SPOC_FPA-like 511 631 - -
Vimu5g02252 1000 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Vimu5g02252 1000 MobiDBLite consensus disorder prediction 739 793 - -
Vimu5g02252 1000 FunFam Flowering time control protein FPA isoform A 94 208 - -
Vimu5g02252 1000 Pfam SPOC domain 506 623 IPR012921 -
Vimu5g02252 1000 MobiDBLite consensus disorder prediction 739 753 - -
Vimu5g02252 1000 SUPERFAMILY RNA-binding domain, RBD 6 92 IPR035979 GO:0003676
Vimu5g02252 1000 MobiDBLite consensus disorder prediction 382 416 - -
Vimu5g02252 1000 MobiDBLite consensus disorder prediction 773 793 - -
Vimu5g02252 1000 CDD RRM_SF 98 164 - -
Vimu5g02252 1000 SMART rrm1_1 97 164 IPR000504 GO:0003723
Vimu5g02252 1000 SMART rrm1_1 217 285 IPR000504 GO:0003723
Vimu5g02252 1000 SMART rrm1_1 20 87 IPR000504 GO:0003723
Vimu5g02252 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 161 IPR000504 GO:0003723
Vimu5g02252 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Vimu5g02252 1000 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 282 IPR000504 GO:0003723
Vimu5g02252 1000 SUPERFAMILY RNA-binding domain, RBD 97 288 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02252 Vimu-Chr5 33688784 33695468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02252 20 279 Eukaryotic Initiation Factors Gene Family AT2G23350 23.404 1.31e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02252 - - gmx:100777570 1723.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00390 4 2786159 2790648 Vimu5g02252 5 33688784 33695468 PCT