Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02250 ATGACTTATACTCCTTATGAGTGTGATAGGATATGGGCAAACAGACAGTCTGCTGCAAGATCAAAAGAAAGGAAGATGCGTTACATTTCTGAGCTTGAAAGGAAAGTGCAGACATTGCAAACAGACGCAACATCCTTGTCTGCACAATTAACTCTCTTGCAGGTATTCCCTATCTCGTCTTCATCTAATGTTGTGTACGTTTCTATTCCACTTATGGCAACGTGTGACAGCTATTTAGAAATATTTAACCTTCAGACGGCTACCATAGATACAAACGGACTGAATGCTGAGAACGGTGAGTTGAAGTTGCGGTTGCAAACGATGGAGCAACAGGTTCACTTGCAAGATGCATTAAATGATGCATTAAAAGAAGAAATTCAGCATTTGAAATTAATGACTGGACAAGCCATTTCAAATGGAGGACACTTTGCTTCATTTGGTGGTGGGCAACAATTCTATCCCAATAATCACGCCATGTACACTCTTTTGGCTGCACAAAAGTTTCAACAACTTCAAATTCAATCCCAGAAGAAGCAGCAGCAGCATCAACTTCAGCAGCAACAACAACAATTTCAGCAACAACAACAACAACTTCAACATCAACTACATCAGCAACAACAACAGCAACAAACAACAGCAACAGGTACTGTAACATCAACAAATGTGGTACTTGAATAA 678 0.3982 MTYTPYECDRIWANRQSAARSKERKMRYISELERKVQTLQTDATSLSAQLTLLQVFPISSSSNVVYVSIPLMATCDSYLEIFNLQTATIDTNGLNAENGELKLRLQTMEQQVHLQDALNDALKEEIQHLKLMTGQAISNGGHFASFGGGQQFYPNNHAMYTLLAAQKFQQLQIQSQKKQQQHQLQQQQQQFQQQQQQLQHQLHQQQQQQQTTATGTVTSTNVVLE 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02250 225 SMART brlzneu 4 84 IPR004827 GO:0003700|GO:0006355
Vimu5g02250 225 Coils Coil 22 49 - -
Vimu5g02250 225 Pfam bZIP transcription factor 13 52 IPR004827 GO:0003700|GO:0006355
Vimu5g02250 225 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 10 214 - -
Vimu5g02250 225 FunFam probable transcription factor PosF21 5 56 - -
Vimu5g02250 225 Coils Coil 170 208 - -
Vimu5g02250 225 SUPERFAMILY Leucine zipper domain 9 54 IPR046347 GO:0003700|GO:0006355
Vimu5g02250 225 Coils Coil 91 125 - -
Vimu5g02250 225 CDD bZIP_plant_RF2 9 54 IPR044759 GO:0003700|GO:0006355
Vimu5g02250 225 Gene3D - 9 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02250 Vimu-Chr5 33671783 33673230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02250 5 190 bZIP Transcription Factor Family AT1G06070 63.830 1.86e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu5g02250 bZIP_1 3.9e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02250 - - vun:114169967 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00392 4 2797818 2798504 Vimu5g02250 5 33671783 33673230 PCT