Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02247 ATGTGGAACTTCCACAGCCACACGAATGGCAAGCTGACCCCACTCTTCATTATTCACATACATAAAGCTGTTCACATTTCAATAGGAAGGTTTGTCTTGTCAGAAAGTGAGAGAAGAGACACTGCTAGGAAGAACATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACAGTGATATGTTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTTCTTCAATGTTTATCAAACAAGCTTCCCAGATGCGACATATGTCAGGATAAGGCAGCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTCTTGCTACTGGTATTAGGGTGGCTTTGGGTTCTAATTGCACCAAAGGCAATGAAAAGGGTCACATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCAGCAGACAAAGCTCAGAAGCAGTCTCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTCCCTGAGGAACCTTTAGCCGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACACTTCACTGTTCCTGATTTAGGCTAG 858 0.4452 MWNFHSHTNGKLTPLFIIHIHKAVHISIGRFVLSESERRDTARKNMKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSNCTKGNEKGHMEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDLLELTDFESADKAQKQSLEFGELEWLADAGLFGEQFPEEPLAAAEVPQLPVTHTSNVASQKASKSFMSYKKPRIEVLDEDDEEHFTVPDLG 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02247 285 CDD Bbox1_BBX-like 102 143 - -
Vimu5g02247 285 ProSiteProfiles Zinc finger B-box type profile. 45 92 IPR000315 GO:0008270
Vimu5g02247 285 ProSiteProfiles Zinc finger B-box type profile. 97 144 IPR000315 GO:0008270
Vimu5g02247 285 SMART bboxneu5 45 92 IPR000315 GO:0008270
Vimu5g02247 285 SMART bboxneu5 97 144 IPR000315 GO:0008270
Vimu5g02247 285 CDD Bbox1_BBX-like 50 92 - -
Vimu5g02247 285 Pfam B-box zinc finger 48 89 IPR000315 GO:0008270
Vimu5g02247 285 Pfam B-box zinc finger 97 140 IPR000315 GO:0008270
Vimu5g02247 285 Gene3D Classic Zinc Finger 45 138 - -
Vimu5g02247 285 PANTHER B-BOX ZINC FINGER PROTEIN 22 46 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02247 Vimu-Chr5 33659843 33662153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02247 46 206 Orphan Transcription Factor Family AT1G06040 69.048 3.45e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vimu5g02247 zf-B_box 2.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02247 - - gmx:100779183 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00396 4 2833399 2837475 Vimu5g02247 5 33659843 33662153 PCT