Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02244 ATGCAAGATTCTTTTGTTGCTGCAGTGGAGTTTGAGATTGATGGTACTGGCGAGACAGTAGCAAATGCTGCTATAGATGAGATTAGTAGCGTGGCTGATGACAACGGAGAAGGTGAATCTATTGAACCAAATTACAAACAAGATGAAGGTGATAATGTTGCTCAAGATTCCTCTAGGATCACAATCCCATTTGCAATTCCCACAGTATCAGTAGTTGCAGTTGAAGAGCCGTATGTGGGTCAGGAATTTGAGTCAGAATCAGCAGCACAGGCATTTTACAATGCATATGCCACAGATGTTGGATTCATCGTGCGTGTGAGTAAACTGTCGCGATCAAGGCGTGATGGAACTGCCATTGGACGTGCTCTTGTTTGCAACAAAGAAGGTTTCAGAATGCCTGACAAGCGTGAGAAGATTGTGAGGCAAAGGGCTGAGACCAGGGTTGGTTGCCGAGCAATGATTATGGTGAGGAAAGTTAGTTCTGGCAAATGGGTTGTTACAAAGCTTGTAAAGGAACATACACATCCTTTGACTCCTGGTAAAGGCAGAAGGGATTTCGTTTACGAACAATATCCGAATGAACATGACAAAATTCGGGAACTATCTCAGCAGTTGGCATGTGAGAAAAAGCGATCTGCAACCTATAAAAGACATCTTGAACTGATATTTGAGCACATTGAAGAGCATAACGAGAGTCTTTCAAAGAAAATACAGCACATAGTAGACAGTGTGAGGGAGATGGAAAAAACCAAAGAACAACAGAGTCAACTTTAA 774 0.4238 MQDSFVAAVEFEIDGTGETVANAAIDEISSVADDNGEGESIEPNYKQDEGDNVAQDSSRITIPFAIPTVSVVAVEEPYVGQEFESESAAQAFYNAYATDVGFIVRVSKLSRSRRDGTAIGRALVCNKEGFRMPDKREKIVRQRAETRVGCRAMIMVRKVSSGKWVVTKLVKEHTHPLTPGKGRRDFVYEQYPNEHDKIRELSQQLACEKKRSATYKRHLELIFEHIEEHNESLSKKIQHIVDSVREMEKTKEQQSQL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02244 257 Pfam FAR1 DNA-binding domain 92 178 IPR004330 -
Vimu5g02244 257 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 33 253 - -
Vimu5g02244 257 MobiDBLite consensus disorder prediction 31 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02244 Vimu-Chr5 33646198 33647133 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu5g02244 FAR1 1.8e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02244 - - var:108338935 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00400 4 2856020 2858507 Vimu5g02244 5 33646198 33647133 PCT