Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02241 ATGCTTTCTGTAGTGGGAGGGAAGTTCCATGCATGTGGGATTAAGAGCTATGATCGTGGAGTGATTTGTTGGGGCTTTATCATCAAACGAAGCACTCCATCTCCTAGAGGGATTAAGGTTTTTGAAGTTGCAGCCGGTGATTACTTTACTTGTGCAGTTCTTGCTGACAAATATCTTATGCCTTCATGTTGGGGAGTTGATTTTCCCACCTCACTTCCTTTAGCTGTTTCACCAGGAATGTGTCAACCTGCTCCATGCCCTCCTGGTTCCTATGCCATTAATCAGCATAAAGGTCTCTGCAAATCACCAGATTCTCGTGTTTGCATGAGGTGCAGCGGTGCTTGTCCTCCTGAAATGTATCAGAAGAGTGCATGCAATTTGGCTTCTGATAGACTCTGTGAATATAACTGTGCCTCTTGTTCTTCATCCCAATGCTTCACGAACTGCTCCTCTTCATACTCCAATGCTTCCACTGAGAAGAAAACTGAAAAATTCTGGGCTTTGCAGTTGCCAGTTGTCATTGCCGAGATTGCTTTTGCAATTTTCATAGTCAGTGTGGTGTCAATAACTGCAATTTTATACGTCCGCTACAGGCTAAAAGATTGTGAGTGTTCAAAAGGGTCAAAGGGGAAGAAACTGAACGGGAGTTCTTCCCTGCAAAACGAGAATAAGGTGAGGCCAGACATTGAGGAGTTGAAGATCAGAAGGGCTCAAATGTTCACCTATGAGGAACTAGAAAGTGCAACTTGTGGATTCAAGGAAGAGTCCATAGTGGGGAAGGGGAGTTTCTCGTGTGTGTTCAAGGGAGTGTTGAAAGATGGGACAGTTGTTGCTGTCAAAAGGGCAATAGTGTCTCCCAACATGCAGAAGAATTCCAAGGAGTTTCACACAGAACTTGACTTGCTTTCAAGGTTGAATCACGCTCATTTGCTCAACCTACTA 942 0.4427 MLSVVGGKFHACGIKSYDRGVICWGFIIKRSTPSPRGIKVFEVAAGDYFTCAVLADKYLMPSCWGVDFPTSLPLAVSPGMCQPAPCPPGSYAINQHKGLCKSPDSRVCMRCSGACPPEMYQKSACNLASDRLCEYNCASCSSSQCFTNCSSSYSNASTEKKTEKFWALQLPVVIAEIAFAIFIVSVVSITAILYVRYRLKDCECSKGSKGKKLNGSSSLQNENKVRPDIEELKIRRAQMFTYEELESATCGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVSPNMQKNSKEFHTELDLLSRLNHAHLLNLL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02241 314 SUPERFAMILY RCC1/BLIP-II 3 69 IPR009091 -
Vimu5g02241 314 SUPERFAMILY Protein kinase-like (PK-like) 233 314 IPR011009 -
Vimu5g02241 314 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 85 133 IPR001368 GO:0005515
Vimu5g02241 314 ProSitePatterns Protein kinases ATP-binding region signature. 258 280 IPR017441 GO:0005524
Vimu5g02241 314 Gene3D - 1 94 IPR009091 -
Vimu5g02241 314 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 2 288 - -
Vimu5g02241 314 Gene3D Phosphorylase Kinase; domain 1 221 314 - -
Vimu5g02241 314 Pfam Protein tyrosine and serine/threonine kinase 255 314 IPR001245 GO:0004672|GO:0006468
Vimu5g02241 314 ProSiteProfiles Protein kinase domain profile. 252 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02241 Vimu-Chr5 33624253 33625236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02241 1 314 Receptor kinase-like Gene Family AT3G59420 60.443 1.97e-123 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Vimu5g02241 PK_Tyr_Ser-Thr 2.7e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02241 - - gmx:100797455 555.829