Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02239 ATGGGGCACAGTTCGAAGAAGAAGAAGCGCGGAGGCGGGAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCCAAAGATCACGCTTCTCAATCAGGCGCCGACGATTACGACCAGCTCTCCGAAGAGATTACCGCAGTATGCGCTATTTTCCAAGAAGACTGCAAAGTTCTTCCAGGCTCGCCTCCTCGTATAGTTATTAAGCTCAGGCCTTACTCAAAGGACATGGGTTATGAAGATCTAGATGTTTCTGCTGCTCTTGTTGTCAGGTGCTTGCCTGGGTATCCTTTCAAGTGTCCCAAGCTGCAGATTACACCGGAGAAAGGGTTATCAGAAGCTGATGCTGATAAGCTTTTATCTCTCCTCCATGATCAGGCTACTTTAAATGCTAGGGAGGGACGAGTAATGATCTATAATCTGGTTGAGGCTGCTCAGGAATTTCTTTCTGGTATTGAGCCAATTGGCATATCAAATGATTCTAAGCTTCTACACTCAACTGTGGAAAGCAATGAAGAATTGTTTACCAAGGATAAGACATCTTTAAGTAAGAAGGGTTCCTTTGTTTATGGTTTCATAGACCTTTTCAGTGGCTATGGAGAAACGTGGAGTTGGGGTTTTGGAATGGATGAAACTGCTGGGAAAAGTTCTTCTCTTCCCTTGTCCAATTTAGATGGCTCAAAACAACACTTTGAGGCTCATGAGAAGAAACTTAATAGTAAGGAAATGCCGTTAGTTATGCAAGAACATCCTGCCGAATTAGGTACTGTCGTAGAAGTTATTGAAGATAGCAAAAGTAGTTTATCCTTGACTAGTTCAAGTACATCATCAGAGGAGGATTTTGTAGGAAACGATAATGAAGGTGAGAAAGAGTATTTTATTGTTGATAAGTATACAACTGAAGATAATGACGGTATTAATGAAAGTGAGTCTCCAAAGGCTCTGCCTTCTGACTTCTTGCCTCATCATCAGCCATCTCAAACAATTGAAAAGGATATACTAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAATAGATCATTGGCTGACTCTTTGCCACAAGTGGTAACCGAGCTGTATAATATAGGGATCATTTCTGATTTAGCACGCGATATGGCATCTAAATCACCTTCCATTTTTAACAAAACCTTTGATCGTGTTTTCCACAAACACCTGGCTTCATCGAGAATATCTCAATTTTGGAACCCTGATCTTGGAGGCTCAAACACAGTTTCCCATACTTCTCGATATTTGAATGACTTTGAGGAGCTGCGTCCTCTAGGTCATGGTGGTTTTGGTCATGTTGTACTGTGCAAAAATAAACTTGACGGAAGGCAATATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTCGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTCTGGTGATTCTGCTTGGGGTTCAAAGACTACACTAAGCTCTACTTTCAGCTTTACCGCTGCAACTTCCAATGATGTCTTTGGGCATGAGAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAATACTGTCCCAGGACTCTTCGCCAGAAGTTTGAATCATACAATCATTTTGACAAAGAACTGGCTTGGCATTTGTTTCGTCAAATAGTGGAAGGCTTGGCACACATACATGGACAAGGAATAATTCATCGGGATTTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTAGAGCAGCTGGATCAAGATGTGGGCCACACTGCTGATGCAACTGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACACGTTGTTTTATCTGATTTGAAACAGAAAGGGGAAGTTCCATCAATTTGGGTTGCTGAATTTCCAGAACAGGAATCCTTACTGAGGCAGTTAATGTCTCCAGCTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCAGCGAATGGAGTCTCAATTATTGGATGGCAAACTGTTGGCATCTAAGAATATCCTTAGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAATTTTAAATGCTATCTTTGACGAAGAGATGCTAAGCACAAAACACATTCGTCAGGTTGGTAGATTGGGATCAGTTGGAGATAGCAGTTCATCCATTCAGTACACAGAATTTGAAACAGAGGTTCGGGATTATGTTGTAGATATGAACAGGGAAATTTTTAGACAGCATTGTGCAAAGCACCTTGAAATATCAACAATGAGATTATTGGAAGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACACATGGAGGAGACATGCTTGAACTTTGCCATGAGTTGCGTTTTCCGTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTTAAACGATATGAGATATCATGTGTCTTTAGAAGAGCAGTTGGCCATTCATCACCAAATCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGCACCTCGGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACGTAGTCACTTGTTTTTTTCATGCAGATTCATGTGACATTCATCTCAACCATGCTGACCTTCTGGATGCAATTTGGTCATGGACTGGAGTAAAGGTAGAACACAGACTCAAAGTAGCAGAGCTTCTCTCAATGATGGGTTCTTTGCGCCCACAATCCTCAGAAAGGAAATCAAAATGGGTCGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAGGCTAAGGTAAATAGGTTACAGACTGTAGGTTTAAGATTTTGTGGATCTGCAGATCATGCACTCCCCCGATTAAGAGGAGCTCTTCCATCTGATAAACGTACATTCAAGGTGCTTGATGAGTTGTCTGAGCTTGTCAGTCTCCTGAGAATTTGGAAGATTGAAAAAAATATATATATTGATGCGTTAATGCCACCAACTGAAAGTTATCACAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTCCTGGATCTCTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGATATGATTACTTGCTTCATCAGCTGTGGAGAAGTGACTCTGTAGGTTATGCACACACTTTTTTTTTCTGA 3333 0.414 MGHSSKKKKRGGGSGRRSKGRTQSKDHASQSGADDYDQLSEEITAVCAIFQEDCKVLPGSPPRIVIKLRPYSKDMGYEDLDVSAALVVRCLPGYPFKCPKLQITPEKGLSEADADKLLSLLHDQATLNAREGRVMIYNLVEAAQEFLSGIEPIGISNDSKLLHSTVESNEELFTKDKTSLSKKGSFVYGFIDLFSGYGETWSWGFGMDETAGKSSSLPLSNLDGSKQHFEAHEKKLNSKEMPLVMQEHPAELGTVVEVIEDSKSSLSLTSSSTSSEEDFVGNDNEGEKEYFIVDKYTTEDNDGINESESPKALPSDFLPHHQPSQTIEKDILMVHMLRLVCASNRSLADSLPQVVTELYNIGIISDLARDMASKSPSIFNKTFDRVFHKHLASSRISQFWNPDLGGSNTVSHTSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSSGDSAWGSKTTLSSTFSFTAATSNDVFGHENQLESTYLYIQMEYCPRTLRQKFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGHTADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGEVPSIWVAEFPEQESLLRQLMSPAPSDRPSATELLQNAFPQRMESQLLDGKLLASKNILRTMQKSEDTSIYDKILNAIFDEEMLSTKHIRQVGRLGSVGDSSSSIQYTEFETEVRDYVVDMNREIFRQHCAKHLEISTMRLLEDCPQFNRNAVKLLTHGGDMLELCHELRFPFVNWIISNQKSSFKRYEISCVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDVVTCFFHADSCDIHLNHADLLDAIWSWTGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAKVNRLQTVGLRFCGSADHALPRLRGALPSDKRTFKVLDELSELVSLLRIWKIEKNIYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGALLAVGGRYDYLLHQLWRSDSVGYAHTFFF 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02239 1110 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Vimu5g02239 1110 Gene3D Ubiquitin Conjugating Enzyme 28 153 IPR016135 -
Vimu5g02239 1110 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 81 733 - -
Vimu5g02239 1110 FunFam eIF-2-alpha kinase GCN2 540 733 - -
Vimu5g02239 1110 SUPERFAMILY UBC-like 36 147 IPR016135 -
Vimu5g02239 1110 FunFam eIF-2-alpha kinase GCN2 789 1107 - -
Vimu5g02239 1110 SUPERFAMILY Class II aaRS and biotin synthetases 791 1098 IPR045864 -
Vimu5g02239 1110 Coils Coil 978 998 - -
Vimu5g02239 1110 SUPERFAMILY Protein kinase-like (PK-like) 416 725 IPR011009 -
Vimu5g02239 1110 Pfam Histidyl-tRNA synthetase 877 1096 IPR041715 -
Vimu5g02239 1110 MobiDBLite consensus disorder prediction 1 36 - -
Vimu5g02239 1110 FunFam eIF-2-alpha kinase GCN2 408 536 - -
Vimu5g02239 1110 MobiDBLite consensus disorder prediction 1 16 - -
Vimu5g02239 1110 Gene3D Phosphorylase Kinase; domain 1 408 536 - -
Vimu5g02239 1110 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
Vimu5g02239 1110 SMART RWD2001b 41 150 IPR006575 GO:0005515
Vimu5g02239 1110 FunFam eIF-2-alpha kinase GCN2 29 154 - -
Vimu5g02239 1110 ProSiteProfiles Protein kinase domain profile. 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02239 1110 Pfam RWD domain 38 147 IPR006575 GO:0005515
Vimu5g02239 1110 Gene3D Transferase(Phosphotransferase) domain 1 539 733 - -
Vimu5g02239 1110 Gene3D Bira Bifunctional Protein; Domain 2 789 1106 IPR045864 -
Vimu5g02239 1110 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02239 1110 MobiDBLite consensus disorder prediction 301 320 - -
Vimu5g02239 1110 CDD STKc_EIF2AK4_GCN2_rpt2 414 720 - -
Vimu5g02239 1110 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02239 Vimu-Chr5 33601463 33618391 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02239 409 751 MAP Kinase Kinase Kinase AT1G63700 25.706 8.65e-24 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Vimu5g02239 Pkinase 7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02239 K16196 - gmx:100797996 1887.46