Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu5g02239 | ATGGGGCACAGTTCGAAGAAGAAGAAGCGCGGAGGCGGGAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCCAAAGATCACGCTTCTCAATCAGGCGCCGACGATTACGACCAGCTCTCCGAAGAGATTACCGCAGTATGCGCTATTTTCCAAGAAGACTGCAAAGTTCTTCCAGGCTCGCCTCCTCGTATAGTTATTAAGCTCAGGCCTTACTCAAAGGACATGGGTTATGAAGATCTAGATGTTTCTGCTGCTCTTGTTGTCAGGTGCTTGCCTGGGTATCCTTTCAAGTGTCCCAAGCTGCAGATTACACCGGAGAAAGGGTTATCAGAAGCTGATGCTGATAAGCTTTTATCTCTCCTCCATGATCAGGCTACTTTAAATGCTAGGGAGGGACGAGTAATGATCTATAATCTGGTTGAGGCTGCTCAGGAATTTCTTTCTGGTATTGAGCCAATTGGCATATCAAATGATTCTAAGCTTCTACACTCAACTGTGGAAAGCAATGAAGAATTGTTTACCAAGGATAAGACATCTTTAAGTAAGAAGGGTTCCTTTGTTTATGGTTTCATAGACCTTTTCAGTGGCTATGGAGAAACGTGGAGTTGGGGTTTTGGAATGGATGAAACTGCTGGGAAAAGTTCTTCTCTTCCCTTGTCCAATTTAGATGGCTCAAAACAACACTTTGAGGCTCATGAGAAGAAACTTAATAGTAAGGAAATGCCGTTAGTTATGCAAGAACATCCTGCCGAATTAGGTACTGTCGTAGAAGTTATTGAAGATAGCAAAAGTAGTTTATCCTTGACTAGTTCAAGTACATCATCAGAGGAGGATTTTGTAGGAAACGATAATGAAGGTGAGAAAGAGTATTTTATTGTTGATAAGTATACAACTGAAGATAATGACGGTATTAATGAAAGTGAGTCTCCAAAGGCTCTGCCTTCTGACTTCTTGCCTCATCATCAGCCATCTCAAACAATTGAAAAGGATATACTAATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAATAGATCATTGGCTGACTCTTTGCCACAAGTGGTAACCGAGCTGTATAATATAGGGATCATTTCTGATTTAGCACGCGATATGGCATCTAAATCACCTTCCATTTTTAACAAAACCTTTGATCGTGTTTTCCACAAACACCTGGCTTCATCGAGAATATCTCAATTTTGGAACCCTGATCTTGGAGGCTCAAACACAGTTTCCCATACTTCTCGATATTTGAATGACTTTGAGGAGCTGCGTCCTCTAGGTCATGGTGGTTTTGGTCATGTTGTACTGTGCAAAAATAAACTTGACGGAAGGCAATATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTCGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTCTGGTGATTCTGCTTGGGGTTCAAAGACTACACTAAGCTCTACTTTCAGCTTTACCGCTGCAACTTCCAATGATGTCTTTGGGCATGAGAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAATACTGTCCCAGGACTCTTCGCCAGAAGTTTGAATCATACAATCATTTTGACAAAGAACTGGCTTGGCATTTGTTTCGTCAAATAGTGGAAGGCTTGGCACACATACATGGACAAGGAATAATTCATCGGGATTTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTAGAGCAGCTGGATCAAGATGTGGGCCACACTGCTGATGCAACTGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACATATTTCTATACAGCTCCTGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACACGTTGTTTTATCTGATTTGAAACAGAAAGGGGAAGTTCCATCAATTTGGGTTGCTGAATTTCCAGAACAGGAATCCTTACTGAGGCAGTTAATGTCTCCAGCTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTTCCTCAGCGAATGGAGTCTCAATTATTGGATGGCAAACTGTTGGCATCTAAGAATATCCTTAGAACAATGCAGAAATCAGAGGATACAAGCATATATGATAAAATTTTAAATGCTATCTTTGACGAAGAGATGCTAAGCACAAAACACATTCGTCAGGTTGGTAGATTGGGATCAGTTGGAGATAGCAGTTCATCCATTCAGTACACAGAATTTGAAACAGAGGTTCGGGATTATGTTGTAGATATGAACAGGGAAATTTTTAGACAGCATTGTGCAAAGCACCTTGAAATATCAACAATGAGATTATTGGAAGATTGTCCACAGTTTAATAGAAATGCAGTTAAACTTCTGACACATGGAGGAGACATGCTTGAACTTTGCCATGAGTTGCGTTTTCCGTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTTAAACGATATGAGATATCATGTGTCTTTAGAAGAGCAGTTGGCCATTCATCACCAAATCGCTACCTTCAGGGAGATTTTGACATTATTGGTGGCACCTCGGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACGTAGTCACTTGTTTTTTTCATGCAGATTCATGTGACATTCATCTCAACCATGCTGACCTTCTGGATGCAATTTGGTCATGGACTGGAGTAAAGGTAGAACACAGACTCAAAGTAGCAGAGCTTCTCTCAATGATGGGTTCTTTGCGCCCACAATCCTCAGAAAGGAAATCAAAATGGGTCGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAGGCTAAGGTAAATAGGTTACAGACTGTAGGTTTAAGATTTTGTGGATCTGCAGATCATGCACTCCCCCGATTAAGAGGAGCTCTTCCATCTGATAAACGTACATTCAAGGTGCTTGATGAGTTGTCTGAGCTTGTCAGTCTCCTGAGAATTTGGAAGATTGAAAAAAATATATATATTGATGCGTTAATGCCACCAACTGAAAGTTATCACAGAGATTTGTTTTTTCAGGTATACTTAAGGAAGGAGAACAGTCCTGGATCTCTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGATATGATTACTTGCTTCATCAGCTGTGGAGAAGTGACTCTGTAGGTTATGCACACACTTTTTTTTTCTGA | 3333 | 0.414 | MGHSSKKKKRGGGSGRRSKGRTQSKDHASQSGADDYDQLSEEITAVCAIFQEDCKVLPGSPPRIVIKLRPYSKDMGYEDLDVSAALVVRCLPGYPFKCPKLQITPEKGLSEADADKLLSLLHDQATLNAREGRVMIYNLVEAAQEFLSGIEPIGISNDSKLLHSTVESNEELFTKDKTSLSKKGSFVYGFIDLFSGYGETWSWGFGMDETAGKSSSLPLSNLDGSKQHFEAHEKKLNSKEMPLVMQEHPAELGTVVEVIEDSKSSLSLTSSSTSSEEDFVGNDNEGEKEYFIVDKYTTEDNDGINESESPKALPSDFLPHHQPSQTIEKDILMVHMLRLVCASNRSLADSLPQVVTELYNIGIISDLARDMASKSPSIFNKTFDRVFHKHLASSRISQFWNPDLGGSNTVSHTSRYLNDFEELRPLGHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSSGDSAWGSKTTLSSTFSFTAATSNDVFGHENQLESTYLYIQMEYCPRTLRQKFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDVGHTADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGEVPSIWVAEFPEQESLLRQLMSPAPSDRPSATELLQNAFPQRMESQLLDGKLLASKNILRTMQKSEDTSIYDKILNAIFDEEMLSTKHIRQVGRLGSVGDSSSSIQYTEFETEVRDYVVDMNREIFRQHCAKHLEISTMRLLEDCPQFNRNAVKLLTHGGDMLELCHELRFPFVNWIISNQKSSFKRYEISCVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDVVTCFFHADSCDIHLNHADLLDAIWSWTGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAKVNRLQTVGLRFCGSADHALPRLRGALPSDKRTFKVLDELSELVSLLRIWKIEKNIYIDALMPPTESYHRDLFFQVYLRKENSPGSLSEGALLAVGGRYDYLLHQLWRSDSVGYAHTFFF | 1110 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu5g02239 | 1110 | ProSiteProfiles | RWD domain profile. | 41 | 150 | IPR006575 | GO:0005515 | |
| Vimu5g02239 | 1110 | Gene3D | Ubiquitin Conjugating Enzyme | 28 | 153 | IPR016135 | - | |
| Vimu5g02239 | 1110 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED | 81 | 733 | - | - | |
| Vimu5g02239 | 1110 | FunFam | eIF-2-alpha kinase GCN2 | 540 | 733 | - | - | |
| Vimu5g02239 | 1110 | SUPERFAMILY | UBC-like | 36 | 147 | IPR016135 | - | |
| Vimu5g02239 | 1110 | FunFam | eIF-2-alpha kinase GCN2 | 789 | 1107 | - | - | |
| Vimu5g02239 | 1110 | SUPERFAMILY | Class II aaRS and biotin synthetases | 791 | 1098 | IPR045864 | - | |
| Vimu5g02239 | 1110 | Coils | Coil | 978 | 998 | - | - | |
| Vimu5g02239 | 1110 | SUPERFAMILY | Protein kinase-like (PK-like) | 416 | 725 | IPR011009 | - | |
| Vimu5g02239 | 1110 | Pfam | Histidyl-tRNA synthetase | 877 | 1096 | IPR041715 | - |
Showing 1 to 10 of 25 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu5g02239 | K16196 | - | gmx:100797996 | 1887.46 |
Showing 1 to 1 of 1 entries