Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02234 ATGAGACCTGCATATCCCTCATTGAGAAACCAAATTAAAAATAGAGTCAAACGGGATGGTTTGATGTCTTCTAAGCGCAAAAGAGCAGCTGATACTAAGCCAGCACCTCGACGTGAAGGCTTACGTCCTCGTCGTTCAAAGGGTGCTGTGATAGAACGATTGATTTCAGAATCAGATGATGAGCAAGACCTGTCAGAGGAAAAGGTTGATCAAGATGAAACAGAAAATGGAAATGATGCTGAGGAAAATGATGCAGATGATGGCCAAAATGAGATTGAGGGGGACGCTGAGGGTGAAGATGAAGGTGAGGATGAAGGTGATGAAGATGGTGATGATGAAGAGGGTGAAGAAGAGCAGGATGGAAGAAGGCGCTATGATCTTCGGAATCGTTCAGATGTTCGGAGGTTCTCTATGGAGGAAAGAAAGGCTCGGCCTAGGTCTCCTCGAAGAGTGTTACATCAAGGTATGGGTACCAAGGTCAGCAGGGATGTAAGGAAAGGTGGGTCACGAGTTCATAAGCGTCATCGTTTAGCAAGGCCTGAAGATTCTGATGACTCACTTCTTGTGGATGAGCTGGACCAAGGCCCAGCTATTTCATGGGGGCGAGGTGGTAACAGATCTGGTCCACCTTGGCTTTTTGGTGGCTTAGACATGCATGGAACAGCAGCTTTTGGATTAAATCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCTTTGGCTACTCTTACATCTGGGATTCAAACTGCTGGACCAAGCTCCAAGGGTGGAGCAGATATCCAACCCTTACAGGTTGACGACAGTGTTAGTTTTGATGATATAGGTGGGCTCTCCGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTATATCCGGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGAGTGTTGTTGTGTGGCCCCCCTGGCACAGGGAAAACATTGATTGCAAGGGCTTTGGCTTGTGCTGCTTCAAAAGCTGGCCAAAAGGTTAGCTTTTACATGCGCAAAGGAGCAGATGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAATTGAAACTACTCTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAGATAGACGGACTTGCACCTGTGAGGTCTAGCAAGCAGGAACAAATTCACAATTCAATTGTGTCCACTTTGCTTGCTTTGATGGATGGTCTTGACTCTCGTGGGCAAGTTGTTTTAATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTACGACGCCCTGGTAGATTTGATCGAGAGTTTAACTTTCCCTTACCTGGTTGTGAGGCACGTGCTGAGATATTAGACATTCATACTCGTAAGTGGAAACATCCTCCTCCAAATGAGCTGAAAAAGGAACTTGCAGCCAGTTGTGTAGGTTACTGTGGTGCTGATCTGAAAGCTCTTTGTACTGAAGCTGCCATCCATGCATTTCGGCAAAAGTATCCACAAGTTTATACAAGTGATGACAAATTTGTTATAGATGTTGATTCTGTCAAGGTAGAAAAGACTCATTTTATTGAAGCAATGTCTACTATTACTCCTGCTGCTCATAGAGGAGCCATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTCCAGCGACATTTAGAGAAAGCCATGAGTGTTATATCTGATATTTTCCCTGCAGCTTCTATTGCATCTGAGTTGACTAAACTTTCAATGCTGTCCTACGGGTCTGCAATTCCACTTGTGTATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGTACAGGGCTGGATACTGTGCATGGAATGCTCTCACAAATGGATCCAGCACTGATTGCTTATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGTTCAACTGTCTGATGAATTAGAGGATTCAACATTCCCTGCTTCTCCTGTTGTGCAGCTGGGTACTGGTACTAGAATGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAACGTGGACCAGAGTTATGAGGCATTGAAGCGAGCTAAGAAGATCACCGAAGTGCATGCAGGTATGAGGCATGATAGTCATGAGTAG 2106 0.4511 MRPAYPSLRNQIKNRVKRDGLMSSKRKRAADTKPAPRREGLRPRRSKGAVIERLISESDDEQDLSEEKVDQDETENGNDAEENDADDGQNEIEGDAEGEDEGEDEGDEDGDDEEGEEEQDGRRRYDLRNRSDVRRFSMEERKARPRSPRRVLHQGMGTKVSRDVRKGGSRVHKRHRLARPEDSDDSLLVDELDQGPAISWGRGGNRSGPPWLFGGLDMHGTAAFGLNLAASGWGHQGDALATLTSGIQTAGPSSKGGADIQPLQVDDSVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILDIHTRKWKHPPPNELKKELAASCVGYCGADLKALCTEAAIHAFRQKYPQVYTSDDKFVIDVDSVKVEKTHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKAMSVISDIFPAASIASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDTVHGMLSQMDPALIAYCDKIASQGGPVQLSDELEDSTFPASPVVQLGTGTRMSARLRHVQPEVNVDQSYEALKRAKKITEVHAGMRHDSHE 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02234 701 Pfam AAA+ lid domain 471 508 IPR041569 -
Vimu5g02234 701 SMART AAA_5 305 446 IPR003593 GO:0016887
Vimu5g02234 701 MobiDBLite consensus disorder prediction 59 116 - -
Vimu5g02234 701 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 534 IPR027417 -
Vimu5g02234 701 MobiDBLite consensus disorder prediction 156 184 - -
Vimu5g02234 701 Gene3D - 267 537 IPR027417 -
Vimu5g02234 701 MobiDBLite consensus disorder prediction 1 129 - -
Vimu5g02234 701 Pfam ATPase family associated with various cellular activities (AAA) 309 444 IPR003959 GO:0005524|GO:0016887
Vimu5g02234 701 ProSitePatterns AAA-protein family signature. 414 432 IPR003960 GO:0005524|GO:0016887
Vimu5g02234 701 Gene3D - 445 530 - -
Vimu5g02234 701 PANTHER AAA DOMAIN-CONTAINING 18 616 IPR045199 -
Vimu5g02234 701 MobiDBLite consensus disorder prediction 12 58 - -
Vimu5g02234 701 FunFam ATPase family AAA domain-containing protein 2B 445 530 - -
Vimu5g02234 701 FunFam ATPase family, AAA domain-containing 2 267 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02234 Vimu-Chr5 33571815 33578849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02234 255 509 Calmodulin-binding Proteins AT3G56690 36.680 3.38e-42 163