Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02228 ATGGGAAGCTGCATTTCAACGCAAGGCGTGAGGACACGCAAAAGGGTCAAGCACACGAGCAAGCCCTCGTCGCCACGAGCCCACGGCCACGGGCACGTGCCAGAACAGACGACGCGGAGGTCGAGCGTGGTGGCGCCTAGGTCGAGCGTGACGGCGCGTCCGCTGAATGTGGTTGCGAACCCGAGTCCAGGGAACATATTCGATAAGTACCAGTTCGGGAAGGAGCTGGGTCGTGGTGAGTTCGGCGTGACTCACCGCGTTGTGGATTTGGTGAGTGGCGAAGCGTTTGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGAACGGAGATTGACGTGGAAGATGTGAAAAGAGAGGTACAGATCATGAGGCACTTGCCTCGACACCCCAACATTGTGGCCTTCAAGGAGGCTTATGAGGACAGAGATGCCGTTTACCTCGTCATGGAACTCTGCGAAGGTGGCGAACTTTTTGATAGGATTGTTGCTAAGGGCCATTACACAGAGCGTGCTGCTGCTAATGTTGCCAAAACCATACTTGAAGTTTGCAAGGTGTGTCATGAGCACGGAGTAATACACAGAGACTTGAAACCTGAAAATTTCTTGTTTGCAGATGCAAGCGAGAATGCTGCATTGAAATCAATTGATTTTGGCCTTTCTACCTTCTATGTGCCTGGTGAACGATTCAGTGAAATTGTTGGAAGCCCTTATTACATGGCTCCAGAGGTTTTAAGACGAAACTATGGACAAGAAATTGATGTCTGGAGCACAGGTGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAAAGCGAGGAAGGGATTGCACAGGCGATCATTAAGGGTAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACATCTAGTTAAGCGCATGCTTGATCCAATTCCATTCACACGGATAACAGTTCAAGAAGTTCTTGATCATCCCTGGATACAAAATAAGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAAAATGAGGATCAAGCAATTCTCCTTGATGAACAGATTCAAAAGAAAGGTTCTTAGAGTGGTAGCGGATAACCTGTCAGATGAACAAATTGAAGCGTTTAAGAAAATGTTTGATATGATGGATAAGGACAAAAATGGAAACTTGTCTTTTGAAGAGCTCAAAGATGGTCTTTCAATGATTGGACACCCCATTCCTGATCCTGATGTCCAAATGTTACTGGAAGCTGCGGATGTTGATGGAAACGGCACCCTTAGCTATGATGAGTTCATCACAATGAGTGTTCACCTCAAAAAGATCGAAGGTGATGAGCATCTCACTCAAGCATTCCGTTACTTTGACAAGAATCAGACCGGATATGTTGAGTTCGAGGAGTTGAAGGATGCCTTATCAGATGATGAGTCGGAAGTGATGAACGACCAAGTGATCAAAGACATTATAAATGATGTTGACTTGGATAAGGATGGTCGAATCAGTTTTGCGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCCTCTCGTCAGTATTCAAGAGCATTGCTGAATGCATTAAGCTTCAAGATGTTTAAAGACACTTCTACCAAAGTGTAA 1629 0.4543 MGSCISTQGVRTRKRVKHTSKPSSPRAHGHGHVPEQTTRRSSVVAPRSSVTARPLNVVANPSPGNIFDKYQFGKELGRGEFGVTHRVVDLVSGEAFACKKIAKTKLRTEIDVEDVKREVQIMRHLPRHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFADASENAALKSIDFGLSTFYVPGERFSEIVGSPYYMAPEVLRRNYGQEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIKGKVDFTRDPWPKVSDEAKHLVKRMLDPIPFTRITVQEVLDHPWIQNKEHGRTISLGDQVKMRIKQFSLMNRFKRKVLRVVADNLSDEQIEAFKKMFDMMDKDKNGNLSFEELKDGLSMIGHPIPDPDVQMLLEAADVDGNGTLSYDEFITMSVHLKKIEGDEHLTQAFRYFDKNQTGYVEFEELKDALSDDESEVMNDQVIKDIINDVDLDKDGRISFAEFKAMMKTGGDWKMASRQYSRALLNALSFKMFKDTSTKV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02228 542 Gene3D - 337 512 - -
Vimu5g02228 542 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Vimu5g02228 542 MobiDBLite consensus disorder prediction 11 25 - -
Vimu5g02228 542 SUPERFAMILY EF-hand 365 515 IPR011992 -
Vimu5g02228 542 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Vimu5g02228 542 SMART efh_1 375 403 IPR002048 GO:0005509
Vimu5g02228 542 SMART efh_1 484 512 IPR002048 GO:0005509
Vimu5g02228 542 SMART efh_1 411 439 IPR002048 GO:0005509
Vimu5g02228 542 SMART efh_1 447 475 IPR002048 GO:0005509
Vimu5g02228 542 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Vimu5g02228 542 Pfam Protein kinase domain 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02228 542 Gene3D Transferase(Phosphotransferase) domain 1 156 336 - -
Vimu5g02228 542 ProSitePatterns EF-hand calcium-binding domain. 420 432 IPR018247 -
Vimu5g02228 542 PANTHER SERINE/THREONINE-PROTEIN KINASE 64 502 - -
Vimu5g02228 542 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Vimu5g02228 542 FunFam calcium-dependent protein kinase 13 156 336 - -
Vimu5g02228 542 MobiDBLite consensus disorder prediction 1 49 - -
Vimu5g02228 542 ProSiteProfiles Protein kinase domain profile. 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02228 542 SUPERFAMILY Protein kinase-like (PK-like) 66 329 IPR011009 -
Vimu5g02228 542 FunFam Calcium-dependent protein kinase 7 337 513 - -
Vimu5g02228 542 FunFam Calcium-dependent protein kinase 1 72 155 - -
Vimu5g02228 542 Pfam EF-hand domain pair 446 510 IPR002048 GO:0005509
Vimu5g02228 542 Pfam EF-hand domain pair 374 435 IPR002048 GO:0005509
Vimu5g02228 542 Gene3D Phosphorylase Kinase; domain 1 72 155 - -
Vimu5g02228 542 SMART serkin_6 70 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02228 542 CDD STKc_CAMK 69 327 - -
Vimu5g02228 542 ProSitePatterns EF-hand calcium-binding domain. 384 396 IPR018247 -
Vimu5g02228 542 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Vimu5g02228 542 ProSiteProfiles EF-hand calcium-binding domain profile. 371 406 IPR002048 GO:0005509
Vimu5g02228 542 CDD EFh 376 435 IPR002048 GO:0005509
Vimu5g02228 542 ProSiteProfiles EF-hand calcium-binding domain profile. 407 442 IPR002048 GO:0005509
Vimu5g02228 542 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02228 Vimu-Chr5 33531349 33534468 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02228 1 537 EF-hand Containing Proteins AT2G31500 65.814 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu5g02228 Pkinase 2.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02228 K13412 - gmx:100818929 951.814