Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02226 ATGACGAATTTCAGGATACTTGCTAATTCAAAGCCATGTCCCAAGTGCAAGCGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACTTGCACACCGCCCTACCACGGTGAAAGAACTGGGGGTTTTTATGCTTGCAATCGCTATGAAACAGCTAAACAAGAAGGAGTGTATGATGATACTGAAAGAAGAAGGGAAATGGCAAAGAATTCACTGGAGAGATACACACATTATTATGAGCGGTGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTGCAGCAGATGCAAACTGTTCATATTGAGAAGCTTAGTGACATACAGTGTCAGCCTGAGTCACAGCTTAAGTTTATTACGGAGGCCTGGCTACAAATAATTGAGTGTAGAAGAGTACTGAAATGGACATACGCATACGGGTTCTACTTACCCGAGCATGAGCTTGCGAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGCCTGGAGAGACTTCATCAATGTGCAGAAAAGGAACTTCAGCCATTCCTATGTGCTGATGAGCCATCTAGAGAGTTCAATGACTTTCGTACTAAACTAGCTGGATTGACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTAAGGGCGTTAGAGAATGGTTTATCTGATGTGGATAGTAATGGAGCTTCCTTCAGCAGAGCAACGAGCTCAAAAAATGCTGCTGGTAGCAGTAAAGGGAGATCCGGAAGAGTAAAGGGAACTTTTCGAACCAGCATGTCCAGCAGAATGAATGATGATAGTCATTGGTGTTGCGAGCATTGTACCTATGCAAATGTCAAATCTGCCACCACATGCCAGATGTGCTATCAACAGCGTAGATGA 879 0.43 MTNFRILANSKPCPKCKRPIEKNQGCMHMTCTPPYHGERTGGFYACNRYETAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLQQMQTVHIEKLSDIQCQPESQLKFITEAWLQIIECRRVLKWTYAYGFYLPEHELAKKQFFEYLQGEAESGLERLHQCAEKELQPFLCADEPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGASFSRATSSKNAAGSSKGRSGRVKGTFRTSMSSRMNDDSHWCCEHCTYANVKSATTCQMCYQQRR 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02226 292 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 9 138 IPR031127 GO:0004842|GO:0016567
Vimu5g02226 292 Pfam Ariadne domain 59 220 IPR045840 -
Vimu5g02226 292 ProSitePatterns Zinc finger RanBP2-type signature. 268 287 IPR001876 -
Vimu5g02226 292 FunFam RBR-type E3 ubiquitin transferase 2 223 - -
Vimu5g02226 292 SUPERFAMILY RING/U-box 6 32 - -
Vimu5g02226 292 SUPERFAMILY Ran binding protein zinc finger-like 264 291 IPR036443 -
Vimu5g02226 292 MobiDBLite consensus disorder prediction 232 259 - -
Vimu5g02226 292 Gene3D - 2 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02226 Vimu-Chr5 33525985 33528913 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02226 6 291 ARIADNE family AT1G65430 71.000 1.26e-148 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02226 K11968 - gmx:100784195 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00412 4 2936720 2944431 Vimu5g02226 5 33525985 33528913 PCT