Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02225 ATGGAGTCGGAGGATGACATGCACGACGCCAACGACATCGATTCCCTCGACGACGATTTCTACAGCGGCGAAACCGAGGATGCGCCCTTGGACTACTACAGCGATTACGACGATGAGGCCGATGATTACTTCGAAGAAGCTGACAGGATTGAGTCTCGTCGCCCTGAGCAAAATTTTACCATTTTGAAGGAATCCGACATCAAACAAAAACAGGAAGAAGACGTCACTAGAGTAGCAACTGTTCTTTCCATATCAAGAATTTTTGCAAGCATACTACTTCGTTACTACAATTGGAGTGTCAGTAGAGTGCATGATGCATGGTTTGCTGATGAAGAACGAGTCAGAAAAGCAGTTGGTTTGTTGGAGAAGCCAATTGTCCAGCATGATAATAATACTAGAGAGGTCCTTTTTGAAGTCTCAGTGTTAGACATGTTTGTAACAAACACTGCCCACATGTTTAAGACACTTTTCATTAGTCTAGTGGCCATGGCAGAGTCTGAGGCTATGAGCCTTATAGGTTTTAGAATTGGTCAATTAGTTGTTGGATTTGATTTCATTTTCTCCTTTTTCTTCGGCTCTCTTACTTGCGGTATCTGTTTTGAAAATTATCCTCGGGCTAGAATTGAAATGGCTTCCTGTGGTCATCCCTACTGTATCTCATGCTGGGAAGGCTATATCAGCACATCCATTAATGATGGTCCTGGGTGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAGCCTTGTAAAATCTGATGAAGATAAGCAGAAATATGCACGTTATCTTCTTAGGTCATACATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATGTGCTGTCACTTTTGATGCTGGTAGTGGTCGGAATTACGATGTCTCTTGCCTCTGTTCATATAGTTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTAGACTGTGGGACTGTGGCAAAGTGGATTTTGAAGAACAGTGCAGAATCTGAAAACATGAATTGGTAA 1044 0.4291 MESEDDMHDANDIDSLDDDFYSGETEDAPLDYYSDYDDEADDYFEEADRIESRRPEQNFTILKESDIKQKQEEDVTRVATVLSISRIFASILLRYYNWSVSRVHDAWFADEERVRKAVGLLEKPIVQHDNNTREVLFEVSVLDMFVTNTAHMFKTLFISLVAMAESEAMSLIGFRIGQLVVGFDFIFSFFFGSLTCGICFENYPRARIEMASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAVGQDMISLVKSDEDKQKYARYLLRSYIEDNKKSKWCPAPGCECAVTFDAGSGRNYDVSCLCSYSFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNW 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02225 347 CDD RING-HC_ARI6-like 195 254 - -
Vimu5g02225 347 SUPERFAMILY RING/U-box 194 277 - -
Vimu5g02225 347 Coils Coil 33 53 - -
Vimu5g02225 347 CDD BRcat_RBR_ANKIB1 272 337 - -
Vimu5g02225 347 MobiDBLite consensus disorder prediction 1 32 - -
Vimu5g02225 347 FunFam RBR-type E3 ubiquitin transferase 191 279 - -
Vimu5g02225 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 280 IPR013083 -
Vimu5g02225 347 SUPERFAMILY RING/U-box 266 335 - -
Vimu5g02225 347 SMART ibrneu5 265 328 IPR002867 GO:0008270
Vimu5g02225 347 Pfam IBR domain, a half RING-finger domain 265 328 IPR002867 GO:0008270
Vimu5g02225 347 ProSiteProfiles TRIAD supradomain profile. 192 347 IPR044066 -
Vimu5g02225 347 Coils Coil 337 347 - -
Vimu5g02225 347 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 66 332 IPR031127 GO:0004842|GO:0016567
Vimu5g02225 347 ProSiteProfiles Zinc finger RING-type profile. 196 240 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02225 Vimu-Chr5 33521757 33525054 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02225 17 347 ARIADNE family AT1G65430 52.339 1.26e-110 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02225 K11968 - pcin:129313099 426.787