Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02203 ATGGATCTAGAGAGACCAATAGAGGACCAGTTCTCCAAATTGCACCCTTCCTTTCCAGAAAACATCAGAATTGGAATAGTTGGTGCTGGTCCAAGTGGCTTATCGGCAGCTTATGCACTAGCCAGGCTTGGTTATAAGAACATCACAGTCTTGGAGAAACATCATACGGTTGGTGGCATGTGTGAATCAGTAGAAATTGAAGGAAAAGTTTATGATCTGGGTGGGCAAGTTCTTGCAGCAAACAGTGCTCCAGTCATTTTTCACTTGGCAAGAGAGACAGCCTCTGAACTAGAAGAATTGGATTCCCACAAGCTTGCTCTCATTGATCATTTCACTGGAAAATATCAAGATATTAAAGTTGCTGATGATTATGTATCAGTTATGTCACTTACATTGGAAATCCAAGAAAAGGTGAAGAATTGTAATCGTATTGGGGTCCATGCTGTTAGTGACATTGCTTCGGACTTAACTCCAGAATATCTTAAGCATCATGGACTCAAATCTGTTCCCAAATCTGTAGCTTATGGTTACACGGCTTCAGGATATGGATTTACTCAAGACATGCCTTATGCCTACCTTCATGAATTTACTAGAACGTCCATGGCTGGAAAAATTCGACGATTCAAAAATGGATATACTAGTCTGTGGCAGAAGATTGCTGAATCGCTTCCCTTAAAACTTTGCTGTAACACTGAAGTATTGGCAATCAGGAGGAACTCCGATGGTGTCACTGTTAAGACCAAGAATTTAAATCAAGTTGAAACTCTGGAATTTGATAAGATAATAATCTCGGGCTCATTTCCATTAAAATATGGAAGAACTTACAGATCATTTCCTTCAACTTGCATAGCACGTGAAACAGAAGTAATGGATGCCAGTGACCTTGAAAAGGAATTGTTCAGCAAAGTAGAGACAAATGACTACTACACCACTGTTATAAAGATAAACGGGCTAGAACATTTGCCTGTTGGATTTTACTATTTTAGTGAATATATGGAAGATCCCAGCACAATAGGACATCCAGTTGCAATGCAAAAGTTTTATGCTGGCACTAACATATTCTTATTCTGGTCCTATGGAAACTCTGTTGATATTAAGGGAGAAGCAGTCACGGAGCTTGCGATCAAGACAACAGAAGCCATGGGGGGAGAAGTTGAGAATGTCATTCTTCAACGCCGCTTTATGTACTTTCCTCATGTTGGTAGCCAAGATATGAAAGATGGGTTTTATGAAAAGTTGGAATCAAAGCTTCAAGGTTCAAGAAATACTTACTATGTAGGTGGACTCATGGCGTTTGAGCTAACAGAGAGAAATTCATCTTATGCCATGGCCCTGATCTGCAAGAACTTTGCACATAGTAATGATTTGCCAATATTTCCTTACATTAAGAATTTGTTTCCCTTGCAAACTGAGTCCCAGAAAAAGAATCCTAAAGAATTAGGTGAATTGGCAGAAGTGCAATTTCCTAATTTGCCTACTTTGAATAGCTACTTAAAGCACTGGGCAACTCATCCAATCACTCAAAACAGGATTCTGTATTCTTGGATTAATGAAGACGGAACTCCAGTGTGGCGAAGGACCTTCGGAGAACTGTATTTTAATTCTTCTTGCATTGCTCATAAGCTTGTAACAAGCCAAAAACCGGTTATAAAGCCAGGTGACAAGGTTCTCCTGGTCTATGTCCCCGGTTTGGATTTTATTGATGCCTTCTTTGGATGCCTAAGAGCTAAAGTCATACCAGTGCCAATTCTTCCTCCAGATCCCATGAAAAGAAATGGACAAGCACTAAAGCAAATTGAAAATATTGCCAAGTCATGTGACATTGTGGCAATTTTGTCAACAGTTGCTTATCACTCAGCAGTTCGTGTAGGTTCAATGAAAAATTTAATCTCATTCGTTGGAAAAAATGAGAAATCTTTGGCTCGGTGGCCGAATCTCCCATGGTTGCACACTGATACATGGGTCAAGAAGTCCAAAAGTCAGGTTTTGGAACATCTTGATGAACAAGGTGAACCTGAGCCTGGTGATATATGTTTCTTGCAGTTTACCTCAGGTTCAACTTGTGATGCTAAAGGAGTCATGATCACTCATGGTGGGCTAATTCACAATGTAAAGTTGATGCGAAGAAGGTACAAGAGCACCTCAAGGACAATGCTAGTAAGCTGGCTTCCTCAGTATCATGACATGGGACTGATTGGGGGACTTTTTACATCTCTTGTTAGTGGTGCTTCTGCAGTATTATTTTCGCCAATGACATTTATCAAGAAACCACTCTTATGGCTTGAAGTTATCAGCAAGTACCGAGCAACTCATAGTGCTGGCCCCAACTTTGCCTTTGAGTTAGTGATTCGAAGATTGGAGTCTCACAAGGATAAGCTTCATAATTTAGACCTTTCATCCTTGACTTTTCTTATGGTTGCTGCTGAACCAGTGAGACCGAAGACCCTGAAAAGATTTGTTGAGCTAACCAGTCCGTTTGGCTTATCTGAAAAGGTGATAGCGCCTGGATATGGTTTAGCAGAAAATTGTGTGTTTGTCTGTTGTGCATATGGAGAAGGTAAGCCGATCATTGTTGATTGGCAGGAAAGAGTTTGTTGTGGTTATGTTAATCATGAGGATGCAGATATTGACATTAGAATAGTTGATCCAGAGACTCTTGAAGAGCTTCGTGAATATGGAAAGGAGGGAGAAATCTGGATTAGTAGTCCAAGTGCGGGAATAGGATACTGGGGAAGGGAAGAATTGAGTCTAAAAACTTTCAGGAATGAACTTCAAAACCTTCCTGGACGTAGCTACACAAGAACTGGAGACTTGGGACGAATAATTGATCAGAAATTATTCATCACTGGAAGAATCAAAGATCTTATCATTGTTGCAGGAAGAAATATTTACTCAGCGGATGTTGAGAAGACAGTTGAGACCTCGTCTGACATTCTTCGTCCTGGTTGCTGTGCTGTCATTGGAGTTCCTGAGGAAATTTTATCAGCAAAGGGGATTTCCACCCCAGATGGCTCTGATCAGGTAGGCTTGGTCGTGATTGCAGAAGTAAGGGATGGTAAGCCAGTCACCAAAGATGTGATTGAGAAAATTAAGACTCGTGTGGTGGAAGAACATGGAGTCAATGTTGCTTCCATCAAATTGGTCAAGCCCAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGGTTTGAATGTGTCAAACAGTTCAGTGATGAAACACTGAGCTTGATACCAATAGGTCCAACACCTGTTTTGAGAAAGAAGTCATTGTTAAGTTCGTTTACAACAGGAATTTTGAGAGAAGGAAAAACACCGGGGCCACTTGCACCAAGGAAAAGGATCAGTAAGAATGAAATTGTAGAGTTCTTGAAAGGGCTAATATCTGAGCAGACTGGAATCTCAATCAACAACATTTCAATCACAGACAACTTAACCTCATATGGAATTGACTCAATTGGTGTGGTTAAAGCAACTCAAAAACTCTCAGATTTCTTGGCAACTCCAATTTCAGCCATAGATGTTTTCACTGCATCCTGCATT 3543 0.4047 MDLERPIEDQFSKLHPSFPENIRIGIVGAGPSGLSAAYALARLGYKNITVLEKHHTVGGMCESVEIEGKVYDLGGQVLAANSAPVIFHLARETASELEELDSHKLALIDHFTGKYQDIKVADDYVSVMSLTLEIQEKVKNCNRIGVHAVSDIASDLTPEYLKHHGLKSVPKSVAYGYTASGYGFTQDMPYAYLHEFTRTSMAGKIRRFKNGYTSLWQKIAESLPLKLCCNTEVLAIRRNSDGVTVKTKNLNQVETLEFDKIIISGSFPLKYGRTYRSFPSTCIARETEVMDASDLEKELFSKVETNDYYTTVIKINGLEHLPVGFYYFSEYMEDPSTIGHPVAMQKFYAGTNIFLFWSYGNSVDIKGEAVTELAIKTTEAMGGEVENVILQRRFMYFPHVGSQDMKDGFYEKLESKLQGSRNTYYVGGLMAFELTERNSSYAMALICKNFAHSNDLPIFPYIKNLFPLQTESQKKNPKELGELAEVQFPNLPTLNSYLKHWATHPITQNRILYSWINEDGTPVWRRTFGELYFNSSCIAHKLVTSQKPVIKPGDKVLLVYVPGLDFIDAFFGCLRAKVIPVPILPPDPMKRNGQALKQIENIAKSCDIVAILSTVAYHSAVRVGSMKNLISFVGKNEKSLARWPNLPWLHTDTWVKKSKSQVLEHLDEQGEPEPGDICFLQFTSGSTCDAKGVMITHGGLIHNVKLMRRRYKSTSRTMLVSWLPQYHDMGLIGGLFTSLVSGASAVLFSPMTFIKKPLLWLEVISKYRATHSAGPNFAFELVIRRLESHKDKLHNLDLSSLTFLMVAAEPVRPKTLKRFVELTSPFGLSEKVIAPGYGLAENCVFVCCAYGEGKPIIVDWQERVCCGYVNHEDADIDIRIVDPETLEELREYGKEGEIWISSPSAGIGYWGREELSLKTFRNELQNLPGRSYTRTGDLGRIIDQKLFITGRIKDLIIVAGRNIYSADVEKTVETSSDILRPGCCAVIGVPEEILSAKGISTPDGSDQVGLVVIAEVRDGKPVTKDVIEKIKTRVVEEHGVNVASIKLVKPRTISKTTSGKIKRFECVKQFSDETLSLIPIGPTPVLRKKSLLSSFTTGILREGKTPGPLAPRKRISKNEIVEFLKGLISEQTGISINNISITDNLTSYGIDSIGVVKATQKLSDFLATPISAIDVFTASCI 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02203 1181 Pfam AMP-binding enzyme 525 958 IPR000873 -
Vimu5g02203 1181 Gene3D - 23 446 IPR036188 -
Vimu5g02203 1181 ProSiteProfiles Carrier protein (CP) domain profile. 1118 1181 IPR009081 -
Vimu5g02203 1181 CDD FAAL 499 1072 IPR040097 GO:0008610
Vimu5g02203 1181 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 131 1181 - -
Vimu5g02203 1181 Pfam Phosphopantetheine attachment site 1123 1180 IPR009081 -
Vimu5g02203 1181 Gene3D - 94 202 - -
Vimu5g02203 1181 Gene3D - 953 1079 IPR045851 -
Vimu5g02203 1181 Gene3D - 479 952 IPR042099 -
Vimu5g02203 1181 Gene3D - 1109 1181 IPR036736 -
Vimu5g02203 1181 Pfam Flavin containing amine oxidoreductase 32 267 IPR002937 GO:0016491
Vimu5g02203 1181 SUPERFAMILY FAD/NAD(P)-binding domain 20 271 IPR036188 -
Vimu5g02203 1181 Gene3D - 303 396 - -
Vimu5g02203 1181 PRINTS Adrenodoxin reductase family signature 47 60 - -
Vimu5g02203 1181 PRINTS Adrenodoxin reductase family signature 23 45 - -
Vimu5g02203 1181 SUPERFAMILY Acetyl-CoA synthetase-like 491 1075 - -
Vimu5g02203 1181 ProSitePatterns Phosphopantetheine attachment site. 1147 1162 IPR006162 -
Vimu5g02203 1181 SUPERFAMILY ACP-like 1116 1178 IPR036736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02203 Vimu-Chr5 33315949 33320676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02203 645 991 Monolignol Biosynthesis Gene Families AT1G20480 25.275 4.93e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02203 - - tpra:123914735 1978.76