Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02201 ATGTCCTCCACCACCGCATCCGGCGACGGCGCTCCATCTCTCCACTTCGATACGCCGACGCTGGACCGGGAGTCAGCGGCGCTTCTCCACTCCATTTCCGAGCACGGCGGGTACGCGTACGTTAGCATGGCAGCGCTGGCGGCCGGGGGCGACATTCGTGCGGCGGAGGCGGCGTGTGAGATGGCGTGGGAGCAGCTGCACTCCGGGCCTTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCTTGCCTCTACGTGGCTCGACACCACTATGGCAACGGCGAGTTCAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGGACGCTCCTCCGCAAGGATTTGGACTTCGCCGTCGCGAAAGTGTCGGAAGAAACTCGAAGGAGCGTTAGGGTTTCTGAATTGGGGGACTCGGGACACCGGTTCGTCGATCGGGACTTTAATGTGGCAGAGGTGAGGTCCGTTCCTCTTTGTTTGCTTTTATCGTCGTTTTTTAATCTGCATTTGGGAAATCTCAATCGTGAAGCTTCGGTGCTCCAACTTTTACCAATGAAGTCTCTTGCTTCTACGCTTGTGGTCAAGAAATCAGCGCTGTCGTTGGATAAATTCCTAAAGGATCATTACCTGTCTCGCTCTCCGGTTATTATCAGCGATTGTATGGCTCACTGGCCAGCCAGCGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCTGGTGACCGCACAGTTCCTGTTGAGGTTGGAAAAAACTATTTATGTGCTGAATGGAAGCAAGAGCTGATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGGTGCCTGTTCTCTTGGTGGTCCTACTTATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTGCGGAAAGATATTTTTATTCCTGACTATTGTTTTGCTGGTGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCTGGAACAGTGACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAAGGAAGTTCCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTGGAGGAAGGAGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGAGGTCTTTGACTACAAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACAATTCTGATGCATCCTAA 1320 0.4992 MSSTTASGDGAPSLHFDTPTLDRESAALLHSISEHGGYAYVSMAALAAGGDIRAAEAACEMAWEQLHSGPWHSVLPVWRDAYSMACLYVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDFAVAKVSEETRRSVRVSELGDSGHRFVDRDFNVAEVRSVPLCLLLSSFFNLHLGNLNREASVLQLLPMKSLASTLVVKKSALSLDKFLKDHYLSRSPVIISDCMAHWPASAKWNDEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFIQRIKSGACSLGGPTYLAQHPLFDQINELRKDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQVDLDDVDERKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDNSDAS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02201 439 Pfam Cupin-like domain 208 432 IPR041667 -
Vimu5g02201 439 SUPERFAMILY Clavaminate synthase-like 203 432 - -
Vimu5g02201 439 ProSiteProfiles JmjC domain profile. 297 439 IPR003347 -
Vimu5g02201 439 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 201 434 - -
Vimu5g02201 439 SMART cupin_9 288 438 IPR003347 -
Vimu5g02201 439 Gene3D Cupin 197 431 - -
Vimu5g02201 439 FunFam lysine-specific demethylase JMJ30 197 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02201 Vimu-Chr5 33303084 33307530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02201 175 430 Acyl Lipid Metabolism Gene Families AT3G45880 24.281 9.79e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu5g02201 Cupin_8 7.1e-47 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02201 K24444 - gmx:100813075 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02201 5 33303084 33307530 Vimu5g02201 5 33303084 33307530 ECH