Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02197 ATGGAGTCAGATCTTCAGCAGCACCCTCCCATGTTTTTGGATCACCACCAGCAGCCGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCTTATTTTTCGAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCTGAAACAGAACGAATGTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCCGATGCTGCTGCTGCTGATGCAGAGGATGCGCTTCCTACTCAAAATCCCTCAACCGTTGTTGCTGTTAAAGAAGAGGTTAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCTCTTGTTCTCCAACAACAACATCAACAACAACAGCAGCAAAGTAATATCAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTACCAGAACATTGGACGACCACCTTTGCCAAACCAGATTGAGACCGGTCGTAGAACTGCTTCAAATCTTATCAGACATGGTAGCTCACCTGCTGGATTGTTTTCAAACATTAACATTGAAAGTGGTTATGCTGCTGTAAGAGGCATGGGAACTATGGGAGCTTCTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCGTAACAAGGATGAAGAACGCACCAAACTACTCTTCGGGATTAATGTCATCAAGGGCTGAAATTGGAAACAAAAACAATACACAGAATAATGCAGAAAATGAAGGGTTTGCTGAAAGCCAGGGCAATGAATTCATCCCTGGTTTCCCCGTTGGTTCATGGGATGATTCTGTAATCATGTCTGACAATATGACAGGTCTGAAGAGACACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACCTACCCGAAAGTCAGAACGAAGCAGGAGGCCAACCTTCCACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACTTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTACAGCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCGAAACGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGAGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACGGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGGTATGTTACAAACCAACCTCTATCACTCCTATACTCTTTCAGAAAATCGCGATAAGTGTACGTGTTCACACAATCAGCAGCAGCAATAACGGAAAAAGAAGGAGACACCCGCGTCATTCCGTGTACATACAGCTTAGTAATAATTTGGTCTGGAAACCAGTGCAGCTTTCCGATAATCATGTAGCCACAACATTTCTTCAGCGGTTGGTTCTTTAG 1407 0.4371 MESDLQQHPPMFLDHHQQPTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERMLTRFVNSLGGGDADADAAAADAEDALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQQHQQQQQQSNINNYGSSAPQNFYQNIGRPPLPNQIETGRRTASNLIRHGSSPAGLFSNINIESGYAAVRGMGTMGASNNSTEEANFSPVTRMKNAPNYSSGLMSSRAEIGNKNNTQNNAENEGFAESQGNEFIPGFPVGSWDDSVIMSDNMTGLKRHREEDVKPFSGLNLPESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLQLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVEVCYKPTSITPILFQKIAISVRVHTISSSNNGKRRRHPRHSVYIQLSNNLVWKPVQLSDNHVATTFLQRLVL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02197 468 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 392 IPR011598 GO:0046983
Vimu5g02197 468 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 399 - -
Vimu5g02197 468 Pfam Helix-loop-helix DNA-binding domain 347 393 IPR011598 GO:0046983
Vimu5g02197 468 SMART finulus 348 398 IPR011598 GO:0046983
Vimu5g02197 468 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 402 IPR036638 GO:0046983
Vimu5g02197 468 Gene3D - 343 403 IPR036638 GO:0046983
Vimu5g02197 468 FunFam Transcription factor bHLH130 family 343 405 - -
Vimu5g02197 468 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02197 Vimu-Chr5 33263681 33266629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02197 1 398 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.889 4.23e-75 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu5g02197 HLH 6.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02197 - - gmx:100803833 615.92