Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02190 ATGGATTCGGCGACAACAGCTCCTCCCCCGTTGCAGGAGCTGGAGCTCGACAACCTCAAAGCTCTCAAAGTCCTAGGAAAAGGTGCCATGGGGACCGTCTTCCTCGTCCACCACACCACCACCAACAACTTCCCCTTCGCCTTGAAAGTCGTCGACAAAACCTGCATCCACGCAAAGCGCGACGCTGAACGCCGCGCGAGTTGGGAAATCCAAGTCCTTTCAACTCTCTCCCATCCCTTTCTTCCTACCCTCCTGGGATCATTCGAGTCCTCACAGTTCTTAGCCTGGGCCCTACCCTACTGTCCCGGCGGCGACCTCAACGTCCTCCGCTACCGTCAAACCGACCACGCCTTCTCCCCCACCGTCATCCGCTTCTACGTAGCAGAAATCCTCTGCGCGCTCCACCATCTCCATTCTATGGGCATAGCATACCGTGACCTCAAACCAGAAAATGTCCTCATCCAAAACAACGGCCACATCACCCTCACCGATTTCGACCTCTCCCGTAAACTCACCCTCAAACCCAAACCCCTTCTTACTTCGATGCCCGTGCCCAATCCCAAGCTCAAAGAACCCCGCCGAAAACACCGTCGCAACTTTTCCCGCTGGATCCCCCTCCCTCCCCTCGACGGGAACCGTAGGAAGGCCAACTCCAACGCCCTCAAGAAAGCCAAGTCCGCGCGAGTCAGCCCGGTGAGTAGACGAAAACTGAGTTTCTCCAACGGCGAGCGCTCCAATTCGTTCGTCGGCACCGAGGAGTACGTCTCGCCGGAGGTCGTTCGCGGCGACGGCCACGAGTTCGCCGTTGATTGGTGGTCCCTCGGAATACTCATCTACGAAATGCTCTACGGTAAGACGCCGTTCAAAGGCAAGAATCGTAAGGAAACGTTCCGCAACGTCCTCACCAAGGCGCCGGAGTTCGTCGGCAAGAGAACCGCGCTCACGGACCTTATCGAGAAGCTCCTGATGAAGGATCCGACGAGGCGGTTGGGCTACACTCGCGGCGCTGCGGAGATCAAGGAGCATGAGTTCTTCCGAGGGGTGAAATGGGACCATTTAACCGAGGTTGTGCGGCCGCCGTTCATTCCGTCGAGGGACGACGGCTCCGCGGAGTCGATGGAGAAGCTTTCCGGCGGGAATTCTGGCATGGATATTAGGGATTACTTTCAGAATCTTAAATCGGTGCCAGCGTCACCGTCAGAGTCACCGTCGGCGTTCCCATCATCGCCGCGGTGGCGGTTAAAGAGAAATGTTTCTCTAACGGAATTCTAA 1272 0.57 MDSATTAPPPLQELELDNLKALKVLGKGAMGTVFLVHHTTTNNFPFALKVVDKTCIHAKRDAERRASWEIQVLSTLSHPFLPTLLGSFESSQFLAWALPYCPGGDLNVLRYRQTDHAFSPTVIRFYVAEILCALHHLHSMGIAYRDLKPENVLIQNNGHITLTDFDLSRKLTLKPKPLLTSMPVPNPKLKEPRRKHRRNFSRWIPLPPLDGNRRKANSNALKKAKSARVSPVSRRKLSFSNGERSNSFVGTEEYVSPEVVRGDGHEFAVDWWSLGILIYEMLYGKTPFKGKNRKETFRNVLTKAPEFVGKRTALTDLIEKLLMKDPTRRLGYTRGAAEIKEHEFFRGVKWDHLTEVVRPPFIPSRDDGSAESMEKLSGGNSGMDIRDYFQNLKSVPASPSESPSAFPSSPRWRLKRNVSLTEF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02190 423 FunFam Serine/threonine-protein kinase UCNL 19 104 - -
Vimu5g02190 423 Gene3D Phosphorylase Kinase; domain 1 19 104 - -
Vimu5g02190 423 FunFam Serine/threonine-protein kinase OXI1 105 173 - -
Vimu5g02190 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vimu5g02190 423 Pfam Protein kinase domain 240 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02190 423 Pfam Protein kinase domain 21 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02190 423 SMART serkin_6 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu5g02190 423 FunFam Serine/threonine-protein kinase OXI1 243 364 - -
Vimu5g02190 423 Gene3D Transferase(Phosphotransferase) domain 1 105 172 - -
Vimu5g02190 423 MobiDBLite consensus disorder prediction 361 380 - -
Vimu5g02190 423 PANTHER FLIPPASE KINASE 1-RELATED 13 366 - -
Vimu5g02190 423 ProSitePatterns Protein kinases ATP-binding region signature. 25 49 IPR017441 GO:0005524
Vimu5g02190 423 Gene3D Transferase(Phosphotransferase) domain 1 242 364 - -
Vimu5g02190 423 SUPERFAMILY Protein kinase-like (PK-like) 16 409 IPR011009 -
Vimu5g02190 423 ProSiteProfiles Protein kinase domain profile. 19 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02190 Vimu-Chr5 33205464 33207075 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02190 14 423 AGC Kinase Gene Family AT3G20830 59.091 2.25e-162 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu5g02190 Pkinase 1.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02190 - - gmx:100785281 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00451 4 3274087 3275223 Vimu5g02190 5 33205464 33207075 PCT