Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02189 ATGAACAACAACTGGCTTTCTTTCCCTCTTTCTCCCACTCATTCTTCCTTACCATCCTCCCATGATCTTCAAGCAACTCAGTACCACCAGTTTTCCCTTGGGCTGGTGAACGAAAGCATGGAAAACCCTTTCCAAAATCATGGTGACCTTCTCTCTCTTCTCTCTCTTCTACTGTCTCTCATTCTATATTTATTTGCCTTGCTAATCTTTCTTTTCCGCTATTTAATTAATTCGACAGATTGGAATCTGATTAACACTCATAGCAGCAACGAAGTTCCAAAAGTGGCTGATTTTCTTGGAGTGAGCAAGTCTGAAAATCAGTCAGAGCTTGCTGCTTTAAACGAAATTCAGTCAAATGATTCAGATTATCTGTTCTCAAACAACAGTCTGGTGCCTTTGCAAAACCCCGTGGTGGACACACAAAGCAATGAGTATCAAGAAAATGCTAACAGTAACTTGCAATCGTTGACATTATCCATGGGAAGTGGTAAGGATTCTACATGTGAAACCAGTGGTGAAAATAGTACAAACACTGTCGAAGCTGCACCTAGAAGAACTTTGGATACTTTCGGTCAGAGAACATCCATATATCGTGGAGTAACGCGACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAATAGCTGTAGAAGGGAAGGACAATCAAGAAAAGGACGCCAAGGTGGATATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATTTAGCAGCACTGAAGTACTGGGGAACATCCACCACTACCAACTTTCCAATTAGCAACTACGAGAAGGAATTGGATGAAATGAAACACATGACCAGACAAGAATTTGTTGCCGCTATAAGAAGGAAAAGTAGCGGTTTCTCTAGAGGTGCATCAATGTATCGCGGAGTTACAAGGCATCACCAACACGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCAGGAAACAAAGATCTTTACTTGGGAACTTTCAGTACTGAGGAAGAGGCTGCAGAAGCTTACGACATAGCAGCGATAAAGTTCAGAGGTCTCAACGCTGTCACAAACTTTGACATGAGCCGTTATGACGTGAAAGCTATTCTCGAAAGCAACACTCTCCCGATAGGAGGAGGCGCTGCAAAACGTCTGAAAGAAGCTCAAGCTCTAGAATCTTCTAGAAAACGTGAAGAGATGATTGCACTAGGCTCATCCACCTTCCAATATGGAACCTCAAGCTCTTCAAGGCTACACGCTTACCCTCTAATGCAGCACCACCAGTTCGAGCAACCTCAACCTCTGCTAACCTTGCAAAACCATGACATGAGTTCTCACTTCTCTCACCAAGACCCTTTACACCAGGGTTACATCCAAACGCAGCTTCAGTTGCACCAGCAGAGTGGTGTTTCTTCTTACCTCCAGAATAATCCTCAGTTCTACGGCGGCTACCTTCAGAACCACCCTGCATTGCTTCAGGGAATGATGAACATGGGGTCTTCTTCTTCTTCGTCTGTGTTGGAGAATAATAACAACAATAATAGCAATGTTGGTGGGTTTGCAGCAGGGAGTGGGTTTGGTTTGGCTTCGAATCCATCGTCGGGTAACGCAGTGGGCGCGGCGGAGGAACTTGGCTTGGTGAAGGTTGACTATGACATGCCAGCCGGAGGTTACGGCGGTTGGTCGGCGGCGGCGGCGGAATCCATGCAGACGTCAAATGGTGGAGTGTTCACAATGTGGAATGAGTGA 1728 0.452 MNNNWLSFPLSPTHSSLPSSHDLQATQYHQFSLGLVNESMENPFQNHGDLLSLLSLLLSLILYLFALLIFLFRYLINSTDWNLINTHSSNEVPKVADFLGVSKSENQSELAALNEIQSNDSDYLFSNNSLVPLQNPVVDTQSNEYQENANSNLQSLTLSMGSGKDSTCETSGENSTNTVEAAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALESSRKREEMIALGSSTFQYGTSSSSRLHAYPLMQHHQFEQPQPLLTLQNHDMSSHFSHQDPLHQGYIQTQLQLHQQSGVSSYLQNNPQFYGGYLQNHPALLQGMMNMGSSSSSSVLENNNNNNSNVGGFAAGSGFGLASNPSSGNAVGAAEELGLVKVDYDMPAGGYGGWSAAAAESMQTSNGGVFTMWNE 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02189 575 FunFam AP2-like ethylene-responsive transcription factor 294 355 - -
Vimu5g02189 575 FunFam AP2-like ethylene-responsive transcription factor ANT 195 261 - -
Vimu5g02189 575 ProSiteProfiles AP2/ERF domain profile. 196 259 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 SMART rav1_2 295 359 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 SMART rav1_2 196 265 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 PRINTS Ethylene responsive element binding protein signature 335 355 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 PRINTS Ethylene responsive element binding protein signature 197 208 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 Pfam AP2 domain 196 251 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 Pfam AP2 domain 296 345 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 ProSiteProfiles AP2/ERF domain profile. 295 353 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 CDD AP2 294 355 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 94 446 - -
Vimu5g02189 575 SUPERFAMILY DNA-binding domain 195 261 IPR016177 GO:0003677
Vimu5g02189 575 Gene3D AP2/ERF domain 196 261 IPR036955 GO:0003700|GO:0006355
Vimu5g02189 575 Gene3D AP2/ERF domain 295 355 IPR036955 GO:0003700|GO:0006355
Vimu5g02189 575 CDD AP2 195 261 IPR001471 GO:0003700|GO:0006355
Vimu5g02189 575 SUPERFAMILY DNA-binding domain 294 355 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02189 Vimu-Chr5 33185565 33188393 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02189 3 575 AP2-EREBP Transcription Factor Family AT1G51190 60.128 0.0 621
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vimu5g02189 AP2 2.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02189 K09285 - gmx:100788471 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02189 5 33185565 33188393 Vimu5g02189 5 33185565 33188393 ECH